Hb_000256_190

Information

Type -
Description -
Location Contig256: 263640-265310
Sequence    

Annotation

kegg
ID rcu:RCOM_0012930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077805.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
swissprot
ID Q3ECH5
description Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=3 SV=1
trembl
ID A0A067KN07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13439 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26702: 263531-265961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
2 Hb_006916_040 0.0619038903 - - 60S ribosomal protein L7a, putative [Ricinus communis]
3 Hb_001347_040 0.0670116677 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
4 Hb_004631_180 0.0688032917 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
5 Hb_112798_020 0.0740368063 - - dnajc14 protein, putative [Ricinus communis]
6 Hb_003124_220 0.0761700653 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
7 Hb_003549_150 0.0808780863 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_017491_030 0.0809990334 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
9 Hb_000928_220 0.0829481483 - - PREDICTED: protein SCAI [Jatropha curcas]
10 Hb_000523_040 0.0839101114 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
11 Hb_000120_430 0.0863513956 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
12 Hb_131646_010 0.0874173768 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_000070_080 0.0879366895 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_001486_340 0.0887360391 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_002078_220 0.0888607693 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_000576_020 0.0888790082 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
17 Hb_000076_160 0.0894596694 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
18 Hb_002078_110 0.0897856881 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
19 Hb_001051_080 0.0903761807 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
20 Hb_001377_070 0.0921729943 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000256_190 Hb_000256_190 Hb_006916_040 Hb_006916_040 Hb_000256_190--Hb_006916_040 Hb_001347_040 Hb_001347_040 Hb_000256_190--Hb_001347_040 Hb_004631_180 Hb_004631_180 Hb_000256_190--Hb_004631_180 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003124_220 Hb_003124_220 Hb_000256_190--Hb_003124_220 Hb_003549_150 Hb_003549_150 Hb_000256_190--Hb_003549_150 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_001347_040--Hb_003124_220 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000718_070 Hb_000718_070 Hb_003124_220--Hb_000718_070 Hb_003124_220--Hb_002078_110 Hb_003124_220--Hb_131646_010 Hb_003124_220--Hb_143395_010 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05999 6.75901 4.70446 4.96964 7.92201 6.34999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02428 4.90861 3.80973 4.29416 1.32329

CAGE analysis