Hb_000576_020

Information

Type -
Description -
Location Contig576: 94845-96719
Sequence    

Annotation

kegg
ID rcu:RCOM_0803450
description hypothetical protein
nr
ID XP_012077466.1
description PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07801 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49663: 94680-96705
cDNA
(Sanger)
(ID:Location)		 012_M19.ab1: 94866-96576 , 014_G01.ab1: 94866-96500 , 044_F05.ab1: 94866-96588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_020 0.0 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
2 Hb_004631_180 0.0517988293 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_006916_040 0.0591670372 - - 60S ribosomal protein L7a, putative [Ricinus communis]
4 Hb_000076_160 0.061643544 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_002311_070 0.0652146305 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
6 Hb_000928_220 0.0683204325 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_001077_030 0.0734758996 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
8 Hb_003096_060 0.0741253444 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_005306_160 0.0757278046 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
10 Hb_000120_430 0.076428373 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
11 Hb_001143_180 0.0766303564 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
12 Hb_000309_040 0.0786978013 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
13 Hb_005355_030 0.0794950933 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
14 Hb_003124_220 0.0795461165 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
15 Hb_005965_030 0.0795822652 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
16 Hb_002078_110 0.0802183707 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
17 Hb_033834_030 0.0809709435 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
18 Hb_012753_170 0.0821191347 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
19 Hb_001051_080 0.0826628228 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
20 Hb_000402_080 0.0848585065 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]

Gene co-expression network

sample Hb_000576_020 Hb_000576_020 Hb_004631_180 Hb_004631_180 Hb_000576_020--Hb_004631_180 Hb_006916_040 Hb_006916_040 Hb_000576_020--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_000576_020--Hb_000076_160 Hb_002311_070 Hb_002311_070 Hb_000576_020--Hb_002311_070 Hb_000928_220 Hb_000928_220 Hb_000576_020--Hb_000928_220 Hb_001077_030 Hb_001077_030 Hb_000576_020--Hb_001077_030 Hb_004631_180--Hb_006916_040 Hb_001051_080 Hb_001051_080 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_006916_040--Hb_000256_190 Hb_006916_040--Hb_001051_080 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000718_070 Hb_000718_070 Hb_002311_070--Hb_000718_070 Hb_002311_070--Hb_001077_030 Hb_000002_490 Hb_000002_490 Hb_002311_070--Hb_000002_490 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_001077_030--Hb_000718_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8705 16.5522 17.9259 14.2894 19.1906 13.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5554 12.5357 8.01095 10.8034 5.53517

CAGE analysis