Hb_003680_230

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3680: 243207-248263
Sequence    

Annotation

kegg
ID rcu:RCOM_0840950
description transcription factor, putative
nr
ID XP_012082543.1
description PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
swissprot
ID Q2JS42
description Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1
trembl
ID A0A067KAG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16629 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate glutamate uridylate kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37853: 243324-243640 , PASA_asmbl_37854: 243723-248224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_230 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
2 Hb_007558_120 0.0542507896 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
3 Hb_000116_060 0.0593543485 - - plant ubiquilin, putative [Ricinus communis]
4 Hb_006816_050 0.0624917582 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
5 Hb_002942_050 0.0675921672 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
6 Hb_005188_060 0.0678467363 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_007943_120 0.068516814 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_001077_030 0.0715941724 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
9 Hb_004635_050 0.0732165003 - - nucleolar phosphoprotein, putative [Ricinus communis]
10 Hb_000718_070 0.0744449023 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000796_190 0.0754499466 - - hypothetical protein F383_31148 [Gossypium arboreum]
12 Hb_001143_180 0.0756389255 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
13 Hb_003633_070 0.076957953 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
14 Hb_001243_060 0.077998453 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
15 Hb_004429_160 0.0795387027 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_000777_050 0.0795777167 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
17 Hb_005965_030 0.0796284942 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
18 Hb_000002_490 0.0800027068 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
19 Hb_009112_010 0.080270975 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_011609_170 0.0806671552 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_230 Hb_003680_230 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_000291_060 Hb_000291_060 Hb_006816_050--Hb_000291_060 Hb_001143_180 Hb_001143_180 Hb_006816_050--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_002942_050--Hb_001143_180 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_005188_060--Hb_004635_050 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_007943_120--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1932 11.4815 9.39746 7.14998 14.3276 12.3114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81756 4.9956 4.56205 5.50963 4.69454

CAGE analysis