Hb_000291_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig291: 52439-58745
Sequence    

Annotation

kegg
ID rcu:RCOM_1032900
description myst histone acetyltransferase, putative (EC:2.3.1.48)
nr
ID XP_012078147.1
description PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
swissprot
ID Q9FLF7
description Histone acetyltransferase of the MYST family 1 OS=Arabidopsis thaliana GN=HAM1 PE=1 SV=1
trembl
ID A0A067KCM9
description Histone acetyltransferase OS=Jatropha curcas GN=JCGZ_12030 PE=3 SV=1
Gene Ontology
ID GO:0004402
description myst-like histone acetyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30494: 52501-58813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_060 0.0 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
2 Hb_006816_050 0.0591157615 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
3 Hb_001143_180 0.0645535472 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
4 Hb_154114_010 0.0686760165 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
5 Hb_002078_110 0.072348877 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
6 Hb_111198_010 0.0750055148 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_001030_110 0.0752076389 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
8 Hb_000418_140 0.07626752 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
9 Hb_000308_030 0.0771647683 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
10 Hb_003633_070 0.0774429297 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
11 Hb_002078_220 0.0786766222 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_001751_140 0.0787527793 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
13 Hb_000260_440 0.0799270039 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
14 Hb_001077_030 0.0809612145 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
15 Hb_003680_230 0.0809792253 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_002325_040 0.0813429516 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
17 Hb_002686_250 0.0817327306 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
18 Hb_183612_040 0.0818723056 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
19 Hb_000116_060 0.082223629 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_000070_080 0.0825369283 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000291_060 Hb_000291_060 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_001143_180 Hb_001143_180 Hb_000291_060--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_003680_230 Hb_003680_230 Hb_006816_050--Hb_003680_230 Hb_007558_120 Hb_007558_120 Hb_006816_050--Hb_007558_120 Hb_006816_050--Hb_001143_180 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_000594_040 Hb_000594_040 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_001030_110--Hb_154114_010 Hb_000617_100 Hb_000617_100 Hb_001030_110--Hb_000617_100 Hb_000789_310 Hb_000789_310 Hb_001030_110--Hb_000789_310 Hb_002805_190 Hb_002805_190 Hb_001030_110--Hb_002805_190 Hb_001030_110--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.922 30.5471 23.1446 17.3311 24.8063 28.2262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6062 12.9568 13.7059 15.2866 12.4585

CAGE analysis