Hb_000594_040

Information

Type -
Description -
Location Contig594: 61557-86467
Sequence    

Annotation

kegg
ID csl:COCSUDRAFT_67190
description hypothetical protein
nr
ID XP_010089728.1
description hypothetical protein L484_013922 [Morus notabilis]
swissprot
ID -
description -
trembl
ID F6HFQ1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03140 PE=4 SV=1
Gene Ontology
ID GO:0007165
description mediator of rna polymerase ii transcription subunit 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50325: 61640-62007 , PASA_asmbl_50326: 65663-65848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_040 0.0 - - hypothetical protein L484_013922 [Morus notabilis]
2 Hb_005260_010 0.0554159284 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
3 Hb_154114_010 0.0569920016 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
4 Hb_000664_070 0.0572836894 - - PREDICTED: protein cereblon [Jatropha curcas]
5 Hb_002163_010 0.0702371129 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
6 Hb_000418_140 0.0735446858 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
7 Hb_008147_040 0.0779904302 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
8 Hb_002783_310 0.0785839774 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
9 Hb_000640_310 0.0788052515 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
10 Hb_000574_540 0.0789151241 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000236_220 0.0815216025 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_010053_030 0.0817531283 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
13 Hb_002078_220 0.081865685 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_006252_020 0.0825643495 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
15 Hb_000032_010 0.0830097061 - - crooked neck protein, putative [Ricinus communis]
16 Hb_001799_050 0.0831183506 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
17 Hb_003777_160 0.0843902163 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
18 Hb_006816_050 0.0849371502 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
19 Hb_000291_060 0.0856669055 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
20 Hb_001454_320 0.0858567937 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_040 Hb_000594_040 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_154114_010 Hb_154114_010 Hb_000594_040--Hb_154114_010 Hb_000664_070 Hb_000664_070 Hb_000594_040--Hb_000664_070 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140 Hb_008147_040 Hb_008147_040 Hb_000594_040--Hb_008147_040 Hb_000768_180 Hb_000768_180 Hb_005260_010--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_005260_010--Hb_000236_220 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_005260_010--Hb_000418_140 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_000291_060 Hb_000291_060 Hb_154114_010--Hb_000291_060 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_000664_070--Hb_008147_040 Hb_000771_180 Hb_000771_180 Hb_000664_070--Hb_000771_180 Hb_000664_070--Hb_000640_310 Hb_002783_310 Hb_002783_310 Hb_000664_070--Hb_002783_310 Hb_000160_350 Hb_000160_350 Hb_000664_070--Hb_000160_350 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_031042_070 Hb_031042_070 Hb_002163_010--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_002163_010--Hb_001633_040 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_003633_070 Hb_003633_070 Hb_000418_140--Hb_003633_070 Hb_001143_250 Hb_001143_250 Hb_000418_140--Hb_001143_250 Hb_000162_280 Hb_000162_280 Hb_000418_140--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120 Hb_001277_020 Hb_001277_020 Hb_008147_040--Hb_001277_020 Hb_008147_040--Hb_154114_010 Hb_000556_170 Hb_000556_170 Hb_008147_040--Hb_000556_170 Hb_008147_040--Hb_000640_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.08592 12.378 5.73067 5.12261 10.9162 9.30624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.51095 4.44701 4.12693 8.21045 3.59571

CAGE analysis