Hb_001143_250

Information

Type -
Description -
Location Contig1143: 236275-243312
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20300g
description POPTRDRAFT_559267; SWIRM domain-containing family protein
nr
ID XP_012078280.1
description PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
swissprot
ID Q9XI07
description SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1
trembl
ID A0A067KCV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12125 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swi snf complex subunit swi3c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04362: 236276-236494 , PASA_asmbl_04363: 239610-242555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_250 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
2 Hb_000418_140 0.059060606 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
3 Hb_003633_070 0.0610488692 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
4 Hb_001799_050 0.0644275379 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
5 Hb_002022_070 0.0688162296 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
6 Hb_007307_020 0.0691969966 - - DNA binding protein, putative [Ricinus communis]
7 Hb_027760_080 0.0700739657 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000574_440 0.072368763 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
9 Hb_000012_140 0.072829854 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008695_110 0.0729695058 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
11 Hb_000914_120 0.0733179592 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
12 Hb_007558_120 0.0734112144 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_005332_020 0.073610947 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000640_310 0.0755554515 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
15 Hb_003785_040 0.0761110914 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_000960_100 0.0777542291 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_002615_090 0.0783468928 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
18 Hb_027380_140 0.0784609358 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
19 Hb_000032_010 0.0789296564 - - crooked neck protein, putative [Ricinus communis]
20 Hb_000796_190 0.0792649766 - - hypothetical protein F383_31148 [Gossypium arboreum]

Gene co-expression network

sample Hb_001143_250 Hb_001143_250 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_000418_140--Hb_003633_070 Hb_000162_280 Hb_000162_280 Hb_000418_140--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120 Hb_003633_070--Hb_001799_050 Hb_003633_070--Hb_009112_010 Hb_003633_070--Hb_000162_280 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_048476_180 Hb_048476_180 Hb_007307_020--Hb_048476_180 Hb_001599_030 Hb_001599_030 Hb_007307_020--Hb_001599_030 Hb_000300_440 Hb_000300_440 Hb_007307_020--Hb_000300_440 Hb_027380_140 Hb_027380_140 Hb_007307_020--Hb_027380_140 Hb_002235_160 Hb_002235_160 Hb_007307_020--Hb_002235_160 Hb_027760_080--Hb_000640_310 Hb_027760_080--Hb_001799_050 Hb_008887_020 Hb_008887_020 Hb_027760_080--Hb_008887_020 Hb_000092_020 Hb_000092_020 Hb_027760_080--Hb_000092_020 Hb_022256_060 Hb_022256_060 Hb_027760_080--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6142 11.4914 6.76103 4.66808 10.4099 10.0471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66881 4.46088 5.58451 7.00773 7.68921

CAGE analysis