Hb_022256_060

Information

Type -
Description -
Location Contig22256: 49838-72112
Sequence    

Annotation

kegg
ID cit:102621146
description uncharacterized LOC102621146
nr
ID XP_012064873.1
description PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05575 PE=4 SV=1
Gene Ontology
ID GO:0003972
description rnaligase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23046: 50199-51116 , PASA_asmbl_23047: 51951-53194 , PASA_asmbl_23048: 53929-56497 , PASA_asmbl_23049: 63921-72115 , PASA_asmbl_23050: 68916-69347 , PASA_asmbl_23051: 70814-71133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022256_060 0.0 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
2 Hb_008887_020 0.0443181312 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
3 Hb_000679_340 0.0490797507 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
4 Hb_008695_110 0.0617931972 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
5 Hb_000230_090 0.0646111637 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
6 Hb_000160_350 0.0669186448 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
7 Hb_001821_160 0.0671428136 - - serine/arginine rich splicing factor, putative [Ricinus communis]
8 Hb_000914_120 0.0674851536 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
9 Hb_079526_030 0.0677168711 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
10 Hb_027760_080 0.0682634823 - - cytochrome P450, putative [Ricinus communis]
11 Hb_005965_030 0.06833026 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
12 Hb_003878_110 0.068562853 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
13 Hb_004785_100 0.0687116407 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000922_020 0.0704188741 - - protein binding protein, putative [Ricinus communis]
15 Hb_003638_090 0.070991282 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
16 Hb_000152_260 0.0743802009 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
17 Hb_002835_230 0.0781653189 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_000334_270 0.0792542986 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_131646_010 0.0804793707 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_005332_020 0.0807399394 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_022256_060 Hb_022256_060 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_000679_340 Hb_000679_340 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_000230_090 Hb_000230_090 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_008887_020--Hb_000679_340 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_005332_020 Hb_005332_020 Hb_008887_020--Hb_005332_020 Hb_000914_120 Hb_000914_120 Hb_008887_020--Hb_000914_120 Hb_008887_020--Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_008695_110--Hb_000230_090 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000230_090--Hb_000914_120 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82087 8.56754 8.75802 4.10633 10.8672 9.77383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56505 5.48852 3.94544 5.27751 6.5924

CAGE analysis