Hb_000084_250

Information

Type -
Description -
Location Contig84: 211645-219481
Sequence    

Annotation

kegg
ID rcu:RCOM_0292800
description nucleolar phosphoprotein, putative
nr
ID XP_002530322.1
description nucleolar phosphoprotein, putative [Ricinus communis]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID B9SWF3
description Nucleolar phosphoprotein, putative OS=Ricinus communis GN=RCOM_0292800 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60049: 211713-219457 , PASA_asmbl_60050: 212018-212509 , PASA_asmbl_60052: 218288-218511 , PASA_asmbl_60053: 217865-219321 , PASA_asmbl_60054: 213701-214207 , PASA_asmbl_60055: 213386-213673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_250 0.0 - - nucleolar phosphoprotein, putative [Ricinus communis]
2 Hb_008695_110 0.0504950163 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
3 Hb_002025_060 0.0586300944 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
4 Hb_000680_090 0.05926905 - - Protein SEY1, putative [Ricinus communis]
5 Hb_000574_440 0.0608267153 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
6 Hb_006831_110 0.0654725953 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
7 Hb_000777_050 0.0690267784 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
8 Hb_002684_040 0.0691226238 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
9 Hb_138596_010 0.0695920817 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
10 Hb_027380_140 0.0705858062 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
11 Hb_002078_110 0.0711247032 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_000502_050 0.0724922559 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
13 Hb_002615_090 0.0725565018 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
14 Hb_000878_180 0.0726276842 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
15 Hb_003785_040 0.0728811422 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_000914_120 0.0737172767 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
17 Hb_002686_250 0.0746213466 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
18 Hb_005993_050 0.0750684277 - - Protein AFR, putative [Ricinus communis]
19 Hb_000462_060 0.0751421565 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
20 Hb_007307_020 0.0767651705 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000084_250 Hb_000084_250 Hb_008695_110 Hb_008695_110 Hb_000084_250--Hb_008695_110 Hb_002025_060 Hb_002025_060 Hb_000084_250--Hb_002025_060 Hb_000680_090 Hb_000680_090 Hb_000084_250--Hb_000680_090 Hb_000574_440 Hb_000574_440 Hb_000084_250--Hb_000574_440 Hb_006831_110 Hb_006831_110 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_008695_110--Hb_000574_440 Hb_000878_180 Hb_000878_180 Hb_002025_060--Hb_000878_180 Hb_002235_300 Hb_002235_300 Hb_002025_060--Hb_002235_300 Hb_002025_060--Hb_008695_110 Hb_002025_060--Hb_000680_090 Hb_001767_140 Hb_001767_140 Hb_002025_060--Hb_001767_140 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000680_090--Hb_000878_180 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_006831_110--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9575 36.7872 30.4301 18.965 39.1875 48.1735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7978 19.0488 30.7003 24.9293 22.7456

CAGE analysis