Hb_002025_060

Information

Type -
Description -
Location Contig2025: 43492-45225
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10890g
description POPTRDRAFT_566357; pentatricopeptide repeat-containing family protein
nr
ID XP_012072436.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
swissprot
ID Q9FX35
description Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2
trembl
ID A0A067KPW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04864 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
2 Hb_000878_180 0.0518750221 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
3 Hb_000084_250 0.0586300944 - - nucleolar phosphoprotein, putative [Ricinus communis]
4 Hb_002235_300 0.0686008624 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
5 Hb_008695_110 0.070970521 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
6 Hb_000680_090 0.0742193298 - - Protein SEY1, putative [Ricinus communis]
7 Hb_001767_140 0.0776697167 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_000684_250 0.0788246763 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
9 Hb_004676_010 0.0802171337 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
10 Hb_002615_090 0.0803856901 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_000914_120 0.0806040077 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
12 Hb_002267_140 0.0809323918 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_027380_140 0.0819495481 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_004357_020 0.0824694983 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
15 Hb_001268_280 0.0844301375 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_320 0.0846581681 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
17 Hb_007062_020 0.0848859357 - - gcn4-complementing protein, putative [Ricinus communis]
18 Hb_007904_030 0.0858911619 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
19 Hb_138596_010 0.0879276618 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
20 Hb_000162_030 0.0890908496 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002025_060 Hb_002025_060 Hb_000878_180 Hb_000878_180 Hb_002025_060--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_002025_060--Hb_000084_250 Hb_002235_300 Hb_002235_300 Hb_002025_060--Hb_002235_300 Hb_008695_110 Hb_008695_110 Hb_002025_060--Hb_008695_110 Hb_000680_090 Hb_000680_090 Hb_002025_060--Hb_000680_090 Hb_001767_140 Hb_001767_140 Hb_002025_060--Hb_001767_140 Hb_002615_090 Hb_002615_090 Hb_000878_180--Hb_002615_090 Hb_000878_180--Hb_000680_090 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000878_180--Hb_000084_250 Hb_000084_250--Hb_008695_110 Hb_000084_250--Hb_000680_090 Hb_000574_440 Hb_000574_440 Hb_000084_250--Hb_000574_440 Hb_006831_110 Hb_006831_110 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_002235_300--Hb_002615_090 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002253_080 Hb_002253_080 Hb_002235_300--Hb_002253_080 Hb_000025_320 Hb_000025_320 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_008695_110--Hb_000574_440 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_001767_140--Hb_002253_080 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32423 2.5061 2.03281 1.26792 2.10865 3.06764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0325 1.06231 2.24204 1.90053 1.62131

CAGE analysis