Hb_000977_120

Information

Type -
Description -
Location Contig977: 94229-107035
Sequence    

Annotation

kegg
ID rcu:RCOM_1076750
description cohesin subunit rad21, putative
nr
ID XP_012078901.1
description PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
swissprot
ID Q8W1Y0
description Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1
trembl
ID A0A067KKZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13409 PE=4 SV=1
Gene Ontology
ID GO:0044763
description cohesin subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64154: 94444-96863 , PASA_asmbl_64155: 98941-107042 , PASA_asmbl_64156: 104862-105117 , PASA_asmbl_64157: 103781-103931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_120 0.0 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
2 Hb_002235_300 0.0408721808 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
3 Hb_002253_080 0.0600447312 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
4 Hb_003729_030 0.0668949653 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
5 Hb_000321_150 0.067597916 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_002615_090 0.0704159503 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
7 Hb_000025_320 0.070508591 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
8 Hb_004483_040 0.072421369 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
9 Hb_002043_140 0.0729164469 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
10 Hb_000174_220 0.0739404431 - - cohesin subunit rad21, putative [Ricinus communis]
11 Hb_000960_100 0.0740093301 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
12 Hb_005539_090 0.074450266 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
13 Hb_002263_040 0.0756335093 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_009767_080 0.0756969523 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
15 Hb_008253_030 0.0759361954 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
16 Hb_002636_100 0.0770595476 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
17 Hb_001967_030 0.07732605 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_000684_250 0.0779793175 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
19 Hb_001767_140 0.0780024413 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
20 Hb_001322_130 0.0809096076 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_120 Hb_000977_120 Hb_002235_300 Hb_002235_300 Hb_000977_120--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_000977_120--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_000977_120--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_000977_120--Hb_000321_150 Hb_002615_090 Hb_002615_090 Hb_000977_120--Hb_002615_090 Hb_000025_320 Hb_000025_320 Hb_000977_120--Hb_000025_320 Hb_002235_300--Hb_002615_090 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002235_300--Hb_002253_080 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002253_080--Hb_002615_090 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_002615_090--Hb_001767_140 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9834 36.45 13.547 11.6833 20.3904 20.8897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2661 10.2014 21.1155 15.1052 17.5746

CAGE analysis