Hb_000260_070

Information

Type -
Description -
Location Contig260: 49590-52268
Sequence    

Annotation

kegg
ID rcu:RCOM_1058620
description kinase, putative (EC:2.7.10.2)
nr
ID XP_002528705.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID B9SRU2
description Kinase, putative OS=Ricinus communis GN=RCOM_1058620 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26936: 49106-52399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_070 0.0 - - kinase, putative [Ricinus communis]
2 Hb_003729_030 0.0648472197 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
3 Hb_013358_010 0.0732958258 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
4 Hb_000321_150 0.0776367055 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
5 Hb_002780_010 0.0802224123 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
6 Hb_000174_290 0.0809461006 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
7 Hb_000094_310 0.081182035 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
8 Hb_002311_100 0.0823498666 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
9 Hb_000487_380 0.083521719 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
10 Hb_005656_040 0.0866854546 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_009898_010 0.0904087312 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
12 Hb_011242_060 0.0928264774 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
13 Hb_004410_120 0.0934079473 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
14 Hb_174865_020 0.0943221713 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
15 Hb_001054_030 0.09442617 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_000069_470 0.0968567295 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_007575_080 0.0976656331 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
18 Hb_001967_030 0.098710865 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
19 Hb_009767_080 0.099951385 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
20 Hb_000976_210 0.1003161017 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_070 Hb_000260_070 Hb_003729_030 Hb_003729_030 Hb_000260_070--Hb_003729_030 Hb_013358_010 Hb_013358_010 Hb_000260_070--Hb_013358_010 Hb_000321_150 Hb_000321_150 Hb_000260_070--Hb_000321_150 Hb_002780_010 Hb_002780_010 Hb_000260_070--Hb_002780_010 Hb_000174_290 Hb_000174_290 Hb_000260_070--Hb_000174_290 Hb_000094_310 Hb_000094_310 Hb_000260_070--Hb_000094_310 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_004410_120 Hb_004410_120 Hb_013358_010--Hb_004410_120 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_002007_160 Hb_002007_160 Hb_002780_010--Hb_002007_160 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_001268_380 Hb_001268_380 Hb_002780_010--Hb_001268_380 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_000174_290--Hb_004410_120 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_019430_020 Hb_019430_020 Hb_000174_290--Hb_019430_020 Hb_001322_130 Hb_001322_130 Hb_000174_290--Hb_001322_130 Hb_000037_220 Hb_000037_220 Hb_000094_310--Hb_000037_220 Hb_000696_050 Hb_000696_050 Hb_000094_310--Hb_000696_050 Hb_003078_020 Hb_003078_020 Hb_000094_310--Hb_003078_020 Hb_000094_310--Hb_003729_030 Hb_002311_100 Hb_002311_100 Hb_000094_310--Hb_002311_100 Hb_009615_170 Hb_009615_170 Hb_000094_310--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4461 48.6314 8.19833 24.6344 22.5382 24.0443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5415 10.256 25.9079 21.1625 21.5036

CAGE analysis