Hb_003078_020

Information

Type -
Description -
Location Contig3078: 32750-36103
Sequence    

Annotation

kegg
ID rcu:RCOM_0379340
description Spotted leaf protein, putative
nr
ID XP_012085141.1
description PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
swissprot
ID Q9SRT0
description U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1
trembl
ID A0A067LKQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15135 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32506: 32845-35914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_020 0.0 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
2 Hb_000094_310 0.0724579289 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
3 Hb_000487_380 0.0760837802 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
4 Hb_008937_010 0.0808802572 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
5 Hb_000941_130 0.0866738559 - - gamma-tubulin complex component, putative [Ricinus communis]
6 Hb_004410_120 0.0917808001 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
7 Hb_001489_100 0.0924375926 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
8 Hb_001674_030 0.0941996472 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
9 Hb_000931_020 0.0963744814 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
10 Hb_008253_020 0.0966801042 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
11 Hb_001318_020 0.0982534145 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
12 Hb_001357_040 0.0987040128 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_009083_070 0.0991087179 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
14 Hb_002046_020 0.0998425372 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
15 Hb_000402_230 0.1003287914 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
16 Hb_000976_210 0.100550544 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
17 Hb_010712_090 0.1008378922 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
18 Hb_003729_030 0.1011104597 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_007850_090 0.1011926969 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
20 Hb_004586_290 0.1013783449 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003078_020 Hb_003078_020 Hb_000094_310 Hb_000094_310 Hb_003078_020--Hb_000094_310 Hb_000487_380 Hb_000487_380 Hb_003078_020--Hb_000487_380 Hb_008937_010 Hb_008937_010 Hb_003078_020--Hb_008937_010 Hb_000941_130 Hb_000941_130 Hb_003078_020--Hb_000941_130 Hb_004410_120 Hb_004410_120 Hb_003078_020--Hb_004410_120 Hb_001489_100 Hb_001489_100 Hb_003078_020--Hb_001489_100 Hb_000037_220 Hb_000037_220 Hb_000094_310--Hb_000037_220 Hb_000696_050 Hb_000696_050 Hb_000094_310--Hb_000696_050 Hb_003729_030 Hb_003729_030 Hb_000094_310--Hb_003729_030 Hb_002311_100 Hb_002311_100 Hb_000094_310--Hb_002311_100 Hb_009615_170 Hb_009615_170 Hb_000094_310--Hb_009615_170 Hb_002046_020 Hb_002046_020 Hb_000487_380--Hb_002046_020 Hb_004586_290 Hb_004586_290 Hb_000487_380--Hb_004586_290 Hb_011242_060 Hb_011242_060 Hb_000487_380--Hb_011242_060 Hb_005568_040 Hb_005568_040 Hb_000487_380--Hb_005568_040 Hb_011287_050 Hb_011287_050 Hb_000487_380--Hb_011287_050 Hb_010407_060 Hb_010407_060 Hb_008937_010--Hb_010407_060 Hb_008937_010--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_008937_010--Hb_008253_020 Hb_000120_910 Hb_000120_910 Hb_008937_010--Hb_000120_910 Hb_001856_220 Hb_001856_220 Hb_008937_010--Hb_001856_220 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_002890_090 Hb_002890_090 Hb_000941_130--Hb_002890_090 Hb_004109_030 Hb_004109_030 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_000941_130--Hb_003729_030 Hb_031042_050 Hb_031042_050 Hb_004410_120--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_004410_120--Hb_013358_010 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_004410_120--Hb_000037_220 Hb_001322_130 Hb_001322_130 Hb_004410_120--Hb_001322_130 Hb_000174_290 Hb_000174_290 Hb_004410_120--Hb_000174_290 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.295 50.0535 16.9928 40.7936 28.5394 27.9928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2484 9.94272 28.0526 26.4795 15.3155

CAGE analysis