Hb_010407_060

Information

Type -
Description -
Location Contig10407: 62938-68219
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002881mg
description hypothetical protein
nr
ID XP_012069851.1
description PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
swissprot
ID Q940J9
description Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=2 SV=1
trembl
ID A0A067L766
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02343 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01505: 62927-68171 , PASA_asmbl_01506: 63632-63788 , PASA_asmbl_01507: 66825-67037
cDNA
(Sanger)
(ID:Location)		 050_P11.ab1: 66470-68171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_060 0.0 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
2 Hb_008937_010 0.0625591188 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
3 Hb_001257_030 0.0737292515 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
4 Hb_000120_910 0.076790172 - - plant ubiquilin, putative [Ricinus communis]
5 Hb_004044_050 0.0772151731 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
6 Hb_027654_020 0.0783566225 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
7 Hb_022425_030 0.0845854692 - - PREDICTED: casein kinase I [Jatropha curcas]
8 Hb_000739_180 0.0856212177 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
9 Hb_000212_420 0.0857925002 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
10 Hb_001828_170 0.0858290152 - - PREDICTED: protein TPLATE [Jatropha curcas]
11 Hb_170077_010 0.0858441784 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
12 Hb_000949_020 0.0865461644 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
13 Hb_004410_120 0.0865965791 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
14 Hb_008253_020 0.0871559553 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
15 Hb_001863_360 0.0875869829 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
16 Hb_004429_010 0.0876093059 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_005214_140 0.0882967286 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
18 Hb_001856_220 0.0888296213 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003918_030 0.0889798255 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_000580_030 0.0894317937 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_060 Hb_010407_060 Hb_008937_010 Hb_008937_010 Hb_010407_060--Hb_008937_010 Hb_001257_030 Hb_001257_030 Hb_010407_060--Hb_001257_030 Hb_000120_910 Hb_000120_910 Hb_010407_060--Hb_000120_910 Hb_004044_050 Hb_004044_050 Hb_010407_060--Hb_004044_050 Hb_027654_020 Hb_027654_020 Hb_010407_060--Hb_027654_020 Hb_022425_030 Hb_022425_030 Hb_010407_060--Hb_022425_030 Hb_001489_100 Hb_001489_100 Hb_008937_010--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_008937_010--Hb_008253_020 Hb_008937_010--Hb_000120_910 Hb_001856_220 Hb_001856_220 Hb_008937_010--Hb_001856_220 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_005214_140 Hb_005214_140 Hb_001257_030--Hb_005214_140 Hb_000739_180 Hb_000739_180 Hb_001257_030--Hb_000739_180 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001817_170 Hb_001817_170 Hb_001257_030--Hb_001817_170 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_004044_050--Hb_022425_030 Hb_004044_050--Hb_005214_140 Hb_001329_250 Hb_001329_250 Hb_004044_050--Hb_001329_250 Hb_000347_300 Hb_000347_300 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_000300_550 Hb_000300_550 Hb_027654_020--Hb_000300_550 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_022425_030--Hb_000347_300 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_001828_170 Hb_001828_170 Hb_022425_030--Hb_001828_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5079 49.5928 36.5572 51.4357 31.4655 25.343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3479 14.1913 26.9281 24.0528 34.7141

CAGE analysis