Hb_000347_300

Information

Type -
Description -
Location Contig347: 329422-332156
Sequence    

Annotation

kegg
ID rcu:RCOM_0083660
description cation:cation antiporter, putative
nr
ID XP_012068867.1
description PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
swissprot
ID Q9SYG9
description Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1
trembl
ID A0A067L870
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24684 PE=4 SV=1
Gene Ontology
ID GO:0005834
description cation calcium exchanger 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36224: 329137-331512 , PASA_asmbl_36225: 331622-331743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_300 0.0 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
2 Hb_001828_170 0.0472720921 - - PREDICTED: protein TPLATE [Jatropha curcas]
3 Hb_002817_060 0.0483287169 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
4 Hb_022425_030 0.0610127148 - - PREDICTED: casein kinase I [Jatropha curcas]
5 Hb_004044_050 0.0684650912 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
6 Hb_022425_060 0.0722418518 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
7 Hb_002686_140 0.074882169 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
8 Hb_001511_180 0.0751133588 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
9 Hb_002631_210 0.0772768941 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
10 Hb_001329_250 0.0784747662 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
11 Hb_007245_020 0.0798479053 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
12 Hb_024650_080 0.0801922064 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
13 Hb_000270_190 0.0817601719 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
14 Hb_000103_290 0.0819996796 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
15 Hb_000358_220 0.0834440658 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
16 Hb_005649_080 0.0835169946 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_170077_010 0.0837527948 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_009615_160 0.0846164733 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
19 Hb_000059_230 0.0847427457 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
20 Hb_005214_140 0.0849385883 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000347_300 Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_000347_300--Hb_001828_170 Hb_002817_060 Hb_002817_060 Hb_000347_300--Hb_002817_060 Hb_022425_030 Hb_022425_030 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_022425_060 Hb_022425_060 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_001828_170--Hb_022425_060 Hb_001828_170--Hb_002817_060 Hb_001329_250 Hb_001329_250 Hb_001828_170--Hb_001329_250 Hb_001828_170--Hb_022425_030 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_022425_030--Hb_004044_050 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_005214_140 Hb_005214_140 Hb_004044_050--Hb_005214_140 Hb_004044_050--Hb_001329_250 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_002631_210 Hb_002631_210 Hb_002686_140--Hb_002631_210 Hb_002276_040 Hb_002276_040 Hb_002686_140--Hb_002276_040 Hb_000080_110 Hb_000080_110 Hb_002686_140--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_002686_140--Hb_009615_160 Hb_002686_140--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09005 19.7528 12.3328 19.5277 8.54914 7.52805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19912 5.24886 10.8961 14.9884 19.1589

CAGE analysis