Hb_003918_030

Information

Type -
Description -
Location Contig3918: 19317-28457
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16130g
description POPTRDRAFT_559189; hypothetical protein
nr
ID XP_012078162.1
description PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L751
description Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1
trembl
ID A0A067KCP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39229: 19457-28500 , PASA_asmbl_39230: 23845-24107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003918_030 0.0 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
2 Hb_000479_070 0.0486958127 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_001545_150 0.0571042092 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
4 Hb_001473_110 0.0617650238 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
5 Hb_003929_210 0.0647863096 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_003939_060 0.065548564 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000110_350 0.0656342118 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_000179_190 0.0680086821 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
9 Hb_000649_250 0.0703547175 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
10 Hb_022425_060 0.0709032877 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
11 Hb_020805_150 0.0720976015 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000008_240 0.0774855522 - - conserved hypothetical protein [Ricinus communis]
13 Hb_170077_010 0.0779349357 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
14 Hb_001776_020 0.0797424623 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
15 Hb_004899_040 0.0799366928 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
16 Hb_009302_030 0.0802293417 - - hypothetical protein RCOM_1176340 [Ricinus communis]
17 Hb_005188_040 0.080385022 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
18 Hb_004044_050 0.0804884934 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
19 Hb_005649_080 0.0807869034 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
20 Hb_001279_120 0.0817383312 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003918_030 Hb_003918_030 Hb_000479_070 Hb_000479_070 Hb_003918_030--Hb_000479_070 Hb_001545_150 Hb_001545_150 Hb_003918_030--Hb_001545_150 Hb_001473_110 Hb_001473_110 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350 Hb_000479_070--Hb_001473_110 Hb_000479_070--Hb_001545_150 Hb_031042_050 Hb_031042_050 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_001545_150--Hb_001279_120 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001473_110--Hb_001488_180 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_003929_210--Hb_003939_060 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_003939_060--Hb_000110_350 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1497 25.4098 13.7424 15.3985 8.81719 10.0188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.42857 7.50256 9.21831 9.11286 16.4215

CAGE analysis