Hb_033312_130

Information

Type -
Description -
Location Contig33312: 107619-123116
Sequence    

Annotation

kegg
ID rcu:RCOM_0371600
description hypothetical protein
nr
ID XP_012077827.1
description PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
swissprot
ID Q8GT66
description Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1
trembl
ID B9T0Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0371600 PE=4 SV=1
Gene Ontology
ID GO:0009528
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34972: 107668-123052 , PASA_asmbl_34973: 118852-118957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_130 0.0 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
2 Hb_003929_210 0.0520787202 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_001008_130 0.054191011 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
4 Hb_006100_020 0.0573539727 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_000960_080 0.0626059796 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
6 Hb_000035_100 0.0636342691 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002357_070 0.0663942345 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
8 Hb_048476_080 0.0673312681 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_000318_150 0.0678674756 - - RNA-binding protein Nova-1, putative [Ricinus communis]
10 Hb_003040_050 0.0681856161 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
11 Hb_000059_240 0.0689443417 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
12 Hb_007413_010 0.0691337038 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
13 Hb_000270_170 0.0695852945 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
14 Hb_002581_010 0.0702312521 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
15 Hb_001925_060 0.0707626895 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
16 Hb_000795_040 0.0715405188 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_010407_080 0.0735626155 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
18 Hb_002686_230 0.0736213376 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_073171_070 0.0736340064 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_001377_190 0.0740525399 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_130 Hb_033312_130 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_001008_130 Hb_001008_130 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003929_210--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_001008_130--Hb_000960_080 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_006100_020--Hb_048476_080 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_001507_050 Hb_001507_050 Hb_000960_080--Hb_001507_050 Hb_000960_080--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000960_080--Hb_000318_150 Hb_000270_170 Hb_000270_170 Hb_000960_080--Hb_000270_170 Hb_000059_240 Hb_000059_240 Hb_000960_080--Hb_000059_240 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_000035_100--Hb_003929_210 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_123531_010 Hb_123531_010 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.689 30.452 22.5239 21.0002 10.8071 13.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.82 13.1189 11.5998 22.3239 31.1014

CAGE analysis