Hb_002042_050

Information

Type -
Description -
Location Contig2042: 55077-63859
Sequence    

Annotation

kegg
ID rcu:RCOM_1431390
description hypothetical protein
nr
ID XP_012089071.1
description PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JU54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20933: 55353-56176 , PASA_asmbl_20934: 56303-57309 , PASA_asmbl_20935: 57915-58109 , PASA_asmbl_20936: 60725-62400 , PASA_asmbl_20938: 63173-63546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_050 0.0 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
2 Hb_002272_030 0.0421181025 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
3 Hb_020178_040 0.0525924528 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000243_260 0.0569452305 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
5 Hb_006100_020 0.0572473459 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_000567_230 0.058187878 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
7 Hb_001817_170 0.0583150063 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
8 Hb_002071_070 0.0584942107 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
9 Hb_000139_080 0.067028824 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_001124_130 0.0684926622 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
11 Hb_000363_290 0.0697790296 - - fimbrin, putative [Ricinus communis]
12 Hb_000025_350 0.0704081599 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
13 Hb_000703_190 0.072097103 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
14 Hb_003758_010 0.0722640016 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
15 Hb_008289_040 0.0731684937 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_008748_030 0.0735470629 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000304_080 0.0738054403 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
18 Hb_033312_040 0.074805115 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
19 Hb_002830_010 0.0753856387 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
20 Hb_001488_020 0.0758234646 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_002042_050 Hb_002042_050 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_002272_030--Hb_020178_040 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_003758_010 Hb_003758_010 Hb_000243_260--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_000243_260--Hb_002631_210 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14203 5.29468 5.488 5.98295 2.58909 2.49452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44952 3.38028 4.48804 5.0167 5.77009

CAGE analysis