Hb_000169_020

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig169: 16196-19964
Sequence    

Annotation

kegg
ID rcu:RCOM_0555710
description hypothetical protein
nr
ID XP_002520678.1
description hypothetical protein RCOM_0555710 [Ricinus communis]
swissprot
ID O82256
description Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1
trembl
ID B9S3V9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15685: 16050-19957 , PASA_asmbl_15686: 16252-19985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_020 0.0 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
2 Hb_000340_040 0.040145187 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
3 Hb_000139_080 0.0624171231 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
4 Hb_006100_020 0.0636539369 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_006913_020 0.0661318274 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
6 Hb_007413_010 0.06817343 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
7 Hb_004324_360 0.071163082 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
8 Hb_000035_090 0.0719476721 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
9 Hb_001008_130 0.0724191495 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
10 Hb_033312_130 0.0750387088 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
11 Hb_005511_140 0.078716576 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
12 Hb_003098_070 0.0806138588 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_001776_020 0.0809379375 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
14 Hb_073171_070 0.081130303 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
15 Hb_022092_030 0.0812409185 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
16 Hb_003125_220 0.0818705346 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
17 Hb_001141_240 0.0830693341 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
18 Hb_000270_480 0.0830917001 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
19 Hb_001511_090 0.0833912552 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
20 Hb_003417_040 0.0841089255 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_020 Hb_000169_020 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_006100_020 Hb_006100_020 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_005511_140 Hb_005511_140 Hb_000340_040--Hb_005511_140 Hb_022092_030 Hb_022092_030 Hb_000340_040--Hb_022092_030 Hb_001511_090 Hb_001511_090 Hb_000340_040--Hb_001511_090 Hb_000340_040--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_000340_040--Hb_001008_130 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_006100_020--Hb_001008_130 Hb_006913_020--Hb_007413_010 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_006913_020--Hb_003098_070 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_004324_360--Hb_033312_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8913 30.9338 32.9319 29.8253 11.5976 18.5105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7739 17.9342 17.5145 21.0107 42.969

CAGE analysis