Hb_022092_030

Information

Type -
Description -
Location Contig22092: 22978-26275
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08840g
description POPTRDRAFT_558638; hypothetical protein
nr
ID XP_012088337.1
description PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
swissprot
ID B9H5L9
description Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1
trembl
ID A0A067JW18
description Lipoyl synthase, mitochondrial OS=Jatropha curcas GN=LIP1 PE=3 SV=1
Gene Ontology
ID GO:0005759
description lipoyl mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22744: 23031-26205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_030 0.0 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
2 Hb_001226_140 0.0721525295 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
3 Hb_000340_040 0.0764722632 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
4 Hb_005511_140 0.0803625039 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
5 Hb_000169_020 0.0812409185 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
6 Hb_000567_230 0.083749514 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
7 Hb_003125_220 0.088734293 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
8 Hb_000193_330 0.0894250275 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
9 Hb_171215_010 0.0933508091 - - vesicle-associated membrane protein, putative [Ricinus communis]
10 Hb_000788_030 0.0942981628 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_000445_090 0.0946468788 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
12 Hb_000504_180 0.0949346809 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_005214_140 0.0953389953 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
14 Hb_000069_610 0.0964326894 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
15 Hb_008705_020 0.0968944743 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_000107_430 0.096951418 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
17 Hb_001301_270 0.0971015412 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
18 Hb_158530_020 0.0985162779 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
19 Hb_004705_160 0.0985296282 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
20 Hb_001029_040 0.0990545936 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]

Gene co-expression network

sample Hb_022092_030 Hb_022092_030 Hb_001226_140 Hb_001226_140 Hb_022092_030--Hb_001226_140 Hb_000340_040 Hb_000340_040 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_000169_020 Hb_000169_020 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_000340_040--Hb_000169_020 Hb_000340_040--Hb_005511_140 Hb_001511_090 Hb_001511_090 Hb_000340_040--Hb_001511_090 Hb_006100_020 Hb_006100_020 Hb_000340_040--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_000340_040--Hb_001008_130 Hb_000023_360 Hb_000023_360 Hb_005511_140--Hb_000023_360 Hb_000282_080 Hb_000282_080 Hb_005511_140--Hb_000282_080 Hb_001195_450 Hb_001195_450 Hb_005511_140--Hb_001195_450 Hb_005511_140--Hb_000169_020 Hb_073973_090 Hb_073973_090 Hb_005511_140--Hb_073973_090 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_002042_050 Hb_002042_050 Hb_000567_230--Hb_002042_050 Hb_002272_030 Hb_002272_030 Hb_000567_230--Hb_002272_030 Hb_001817_170 Hb_001817_170 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_000567_230--Hb_006100_020 Hb_000567_230--Hb_000139_080 Hb_024184_010 Hb_024184_010 Hb_003125_220--Hb_024184_010 Hb_003125_220--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_003125_220--Hb_001776_020 Hb_001627_040 Hb_001627_040 Hb_003125_220--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_003125_220--Hb_007545_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9007 27.1041 29.3902 33.704 11.8335 12.6912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6355 18.0572 24.3062 16.6912 50.484

CAGE analysis