Hb_024184_010

Information

Type -
Description -
Location Contig24184: 744-3850
Sequence    

Annotation

kegg
ID cit:102628226
description clustered mitochondria protein-like
nr
ID XP_006495362.1
description PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
swissprot
ID F4J5S1
description Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1
trembl
ID V4SJ77
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100271933mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description clustered mitochondria protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25315: 1-2450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024184_010 0.0 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
2 Hb_001876_040 0.0704474746 - - PREDICTED: mucin-5B [Jatropha curcas]
3 Hb_001157_230 0.075690462 - - Protein AFR, putative [Ricinus communis]
4 Hb_003125_220 0.0790558948 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
5 Hb_000212_120 0.0840391685 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
6 Hb_002883_030 0.0853983136 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
7 Hb_007545_010 0.087005066 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
8 Hb_015099_030 0.0872885487 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
9 Hb_004531_100 0.0877831798 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
10 Hb_002774_190 0.0879389898 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
11 Hb_001421_090 0.0895973568 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_022250_010 0.0933498949 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_006970_020 0.0945328767 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_000291_180 0.0949146717 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
15 Hb_008014_040 0.0958268718 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
16 Hb_001029_040 0.0964198446 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
17 Hb_004957_030 0.0964493277 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_000108_020 0.0968231064 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
19 Hb_001301_270 0.0969567437 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
20 Hb_001627_040 0.0974505705 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_024184_010 Hb_024184_010 Hb_001876_040 Hb_001876_040 Hb_024184_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_024184_010--Hb_001157_230 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_000212_120 Hb_000212_120 Hb_024184_010--Hb_000212_120 Hb_002883_030 Hb_002883_030 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_001157_230--Hb_000212_120 Hb_001157_230--Hb_022250_010 Hb_001157_230--Hb_032202_220 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_000169_020 Hb_000169_020 Hb_003125_220--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_003125_220--Hb_001776_020 Hb_022092_030 Hb_022092_030 Hb_003125_220--Hb_022092_030 Hb_001627_040 Hb_001627_040 Hb_003125_220--Hb_001627_040 Hb_003125_220--Hb_007545_010 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_000212_120--Hb_002883_030 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84713 7.06577 9.96369 12.7001 3.89928 8.14368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86174 4.62687 3.94996 5.14739 15.5253

CAGE analysis