Hb_003125_220

Information

Type -
Description -
Location Contig3125: 150689-156718
Sequence    

Annotation

kegg
ID rcu:RCOM_1505790
description hypothetical protein
nr
ID XP_012090679.1
description PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
swissprot
ID P0DH79
description CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=1 SV=1
trembl
ID A0A067JRJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33077: 150708-156658 , PASA_asmbl_33078: 155258-155480
cDNA
(Sanger)
(ID:Location)		 024_K05.ab1: 156470-156654 , 042_L02.ab1: 154105-156657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_220 0.0 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
2 Hb_024184_010 0.0790558948 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
3 Hb_000169_020 0.0818705346 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
4 Hb_001776_020 0.0864855122 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
5 Hb_022092_030 0.088734293 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
6 Hb_001627_040 0.0931982726 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
7 Hb_007545_010 0.0942075586 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
8 Hb_000340_040 0.0957566658 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
9 Hb_001029_040 0.0959878935 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
10 Hb_000270_480 0.0961189647 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
11 Hb_001421_090 0.0980546978 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_001329_250 0.0992189508 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
13 Hb_000193_330 0.1018464768 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
14 Hb_000538_280 0.1022799888 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
15 Hb_003498_080 0.1031330766 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
16 Hb_004531_100 0.1034287265 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
17 Hb_000922_060 0.1037704466 - - kinesin light chain, putative [Ricinus communis]
18 Hb_012799_050 0.1039931677 - - PREDICTED: remorin [Jatropha curcas]
19 Hb_001876_040 0.1043634222 - - PREDICTED: mucin-5B [Jatropha curcas]
20 Hb_000300_510 0.1047372512 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_220 Hb_003125_220 Hb_024184_010 Hb_024184_010 Hb_003125_220--Hb_024184_010 Hb_000169_020 Hb_000169_020 Hb_003125_220--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_003125_220--Hb_001776_020 Hb_022092_030 Hb_022092_030 Hb_003125_220--Hb_022092_030 Hb_001627_040 Hb_001627_040 Hb_003125_220--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_003125_220--Hb_007545_010 Hb_001876_040 Hb_001876_040 Hb_024184_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_024184_010--Hb_001157_230 Hb_000212_120 Hb_000212_120 Hb_024184_010--Hb_000212_120 Hb_002883_030 Hb_002883_030 Hb_024184_010--Hb_002883_030 Hb_024184_010--Hb_007545_010 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_006100_020 Hb_006100_020 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_003498_080 Hb_003498_080 Hb_001776_020--Hb_003498_080 Hb_001481_060 Hb_001481_060 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000212_420 Hb_000212_420 Hb_001776_020--Hb_000212_420 Hb_000103_340 Hb_000103_340 Hb_001776_020--Hb_000103_340 Hb_010315_020 Hb_010315_020 Hb_001776_020--Hb_010315_020 Hb_001226_140 Hb_001226_140 Hb_022092_030--Hb_001226_140 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_001029_040 Hb_001029_040 Hb_001627_040--Hb_001029_040 Hb_001080_300 Hb_001080_300 Hb_001627_040--Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001627_040--Hb_004957_030 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_000417_390 Hb_000417_390 Hb_001627_040--Hb_000417_390 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_007545_010--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2888 20.9753 19.4866 25.8939 6.22087 13.734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7169 8.84814 12.0547 9.08276 31.278

CAGE analysis