Hb_001776_020

Information

Type -
Description -
Location Contig1776: 17215-19571
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24720g
description POPTRDRAFT_549167; Protein kinase capable of phosphorylating tyrosine family protein
nr
ID XP_002299870.1
description Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9GJM9
description Protein kinase capable of phosphorylating tyrosine family protein OS=Populus trichocarpa GN=POPTR_0001s24720g PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17057: 17017-20430 , PASA_asmbl_17058: 17017-20503 , PASA_asmbl_17059: 19460-19601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_020 0.0 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
2 Hb_003498_080 0.0600112955 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
3 Hb_001481_060 0.0712734691 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
4 Hb_004531_100 0.0721596646 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
5 Hb_000212_420 0.0722537425 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
6 Hb_000103_340 0.07309022 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_010315_020 0.0730938693 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
8 Hb_003040_050 0.0771119612 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
9 Hb_001329_250 0.0773045438 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
10 Hb_001408_110 0.079096259 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
11 Hb_001473_110 0.0793042517 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_003929_210 0.0796907954 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
13 Hb_003918_030 0.0797424623 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
14 Hb_000169_020 0.0809379375 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
15 Hb_005214_140 0.0813740089 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
16 Hb_002883_030 0.0819352174 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
17 Hb_001716_020 0.0821617571 - - hydrolase, putative [Ricinus communis]
18 Hb_011249_070 0.0822561011 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
19 Hb_000300_270 0.0825500805 - - cationic amino acid transporter, putative [Ricinus communis]
20 Hb_017214_040 0.0829439694 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_020 Hb_001776_020 Hb_003498_080 Hb_003498_080 Hb_001776_020--Hb_003498_080 Hb_001481_060 Hb_001481_060 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000212_420 Hb_000212_420 Hb_001776_020--Hb_000212_420 Hb_000103_340 Hb_000103_340 Hb_001776_020--Hb_000103_340 Hb_010315_020 Hb_010315_020 Hb_001776_020--Hb_010315_020 Hb_001329_250 Hb_001329_250 Hb_003498_080--Hb_001329_250 Hb_003498_080--Hb_000212_420 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050 Hb_012114_100 Hb_012114_100 Hb_003498_080--Hb_012114_100 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_001541_150 Hb_001541_150 Hb_004531_100--Hb_001541_150 Hb_004531_100--Hb_010315_020 Hb_002883_030 Hb_002883_030 Hb_004531_100--Hb_002883_030 Hb_000336_020 Hb_000336_020 Hb_004531_100--Hb_000336_020 Hb_000212_120 Hb_000212_120 Hb_004531_100--Hb_000212_120 Hb_000212_420--Hb_010315_020 Hb_000212_420--Hb_001329_250 Hb_008014_040 Hb_008014_040 Hb_000212_420--Hb_008014_040 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.23369 18.6405 14.5917 17.8056 7.08736 12.4628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02165 8.28049 8.14827 9.66032 17.476

CAGE analysis