Hb_000212_420

Information

Type -
Description -
Location Contig212: 431231-437074
Sequence    

Annotation

kegg
ID rcu:RCOM_1077980
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012085772.1
description PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
swissprot
ID Q9M8R7
description Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1
trembl
ID A0A067JSD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18034 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21986: 431630-436678 , PASA_asmbl_21987: 431630-436813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_420 0.0 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
2 Hb_010315_020 0.0500978785 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
3 Hb_001329_250 0.0562768595 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
4 Hb_003498_080 0.0598998846 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
5 Hb_008014_040 0.0610360743 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
6 Hb_001776_020 0.0722537425 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
7 Hb_010042_030 0.0764266559 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
8 Hb_000017_230 0.0781097178 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
9 Hb_005977_100 0.0788902782 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
10 Hb_006120_050 0.0792506098 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
11 Hb_001828_170 0.0807882024 - - PREDICTED: protein TPLATE [Jatropha curcas]
12 Hb_000066_150 0.0810945062 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_007545_010 0.0833834955 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
14 Hb_000085_260 0.0839401138 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
15 Hb_121089_030 0.084292899 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
16 Hb_008511_020 0.084422866 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
17 Hb_010407_060 0.0857925002 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
18 Hb_001440_020 0.0861613166 - - exocyst componenet sec8, putative [Ricinus communis]
19 Hb_001863_360 0.0862824135 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
20 Hb_005214_140 0.0864082593 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000212_420 Hb_000212_420 Hb_010315_020 Hb_010315_020 Hb_000212_420--Hb_010315_020 Hb_001329_250 Hb_001329_250 Hb_000212_420--Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_000212_420--Hb_003498_080 Hb_008014_040 Hb_008014_040 Hb_000212_420--Hb_008014_040 Hb_001776_020 Hb_001776_020 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_001329_250--Hb_003498_080 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050 Hb_012114_100 Hb_012114_100 Hb_003498_080--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_008014_040--Hb_008511_020 Hb_000069_570 Hb_000069_570 Hb_008014_040--Hb_000069_570 Hb_022250_010 Hb_022250_010 Hb_008014_040--Hb_022250_010 Hb_159809_030 Hb_159809_030 Hb_008014_040--Hb_159809_030 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000103_340 Hb_000103_340 Hb_001776_020--Hb_000103_340 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8201 28.1899 25.2766 37.0028 13.7318 20.7171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1039 8.72343 15.5581 18.0623 28.5541

CAGE analysis