Hb_000085_260

Information

Type -
Description -
Location Contig85: 228012-236774
Sequence    

Annotation

kegg
ID rcu:RCOM_0046160
description glycerophosphoryl diester phosphodiesterase, putative
nr
ID XP_002529027.1
description glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q9FJ62
description Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana GN=GDPDL4 PE=1 SV=1
trembl
ID B9SSQ8
description Glycerophosphoryl diester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_0046160 PE=4 SV=1
Gene Ontology
ID GO:0008889
description glycerophosphodiester phosphodiesterase gdpdl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60364: 228018-236848 , PASA_asmbl_60365: 228018-236840
cDNA
(Sanger)
(ID:Location)		 033_F17.ab1: 228031-230519 , 052_I16.ab1: 228031-230519 , 053_F22.ab1: 228018-231954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_260 0.0 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
2 Hb_001159_030 0.0512081761 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
3 Hb_010042_030 0.0513127689 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
4 Hb_005062_110 0.057368817 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
5 Hb_000098_050 0.0760570163 - - BnaCnng11900D [Brassica napus]
6 Hb_000503_020 0.0774247931 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
7 Hb_000679_100 0.0784110566 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
8 Hb_000265_140 0.0797050499 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
9 Hb_002486_050 0.0809992362 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_001097_040 0.0835407597 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
11 Hb_000212_420 0.0839401138 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
12 Hb_002007_260 0.0846565917 - - beta-mannosidase, putative [Ricinus communis]
13 Hb_000579_130 0.086859279 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000359_190 0.0868685543 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
15 Hb_000320_290 0.0877223616 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
16 Hb_001246_130 0.0878246801 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
17 Hb_000890_030 0.0893526874 - - plastid CUL1 [Hevea brasiliensis]
18 Hb_006120_050 0.0896806714 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
19 Hb_012194_060 0.089689633 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
20 Hb_003038_040 0.0900786872 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000085_260 Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_000085_260--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_000085_260--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_001159_030--Hb_010042_030 Hb_001159_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_001159_030--Hb_002007_260 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040 Hb_010042_030--Hb_005062_110 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290 Hb_005062_110--Hb_000503_020 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_009247_010 Hb_009247_010 Hb_000098_050--Hb_009247_010 Hb_000098_050--Hb_000320_290 Hb_000098_050--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_000098_050--Hb_000890_030 Hb_044486_020 Hb_044486_020 Hb_000098_050--Hb_044486_020 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_000503_020--Hb_000320_290 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_000679_100--Hb_001097_040 Hb_007286_020 Hb_007286_020 Hb_000679_100--Hb_007286_020 Hb_001051_070 Hb_001051_070 Hb_000679_100--Hb_001051_070 Hb_000023_300 Hb_000023_300 Hb_000679_100--Hb_000023_300 Hb_000679_100--Hb_010042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5192 22.7532 21.7011 41.9893 11.2976 15.5557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87935 5.22895 10.7324 19.612 20.3481

CAGE analysis