Hb_003038_040

Information

Type transcription factor
Description TF Family: TUB
Location Contig3038: 23339-25970
Sequence    

Annotation

kegg
ID rcu:RCOM_0535950
description phosphoric diester hydrolase, putative
nr
ID XP_002521568.1
description phosphoric diester hydrolase, putative [Ricinus communis]
swissprot
ID Q6Z2G9
description Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1
trembl
ID B9S6E9
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_0535950 PE=3 SV=1
Gene Ontology
ID GO:0005634
description tubby-like f-box protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32031: 23145-25957
cDNA
(Sanger)
(ID:Location)		 009_K19.ab1: 24194-25957 , 028_P01.ab1: 24764-25957 , 044_L19.ab1: 24547-25957 , 049_N01.ab1: 24554-25957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_040 0.0 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
2 Hb_003994_220 0.0573457455 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
3 Hb_000161_210 0.0680001328 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
4 Hb_001097_040 0.0707941911 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
5 Hb_065500_020 0.0712793484 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
6 Hb_001159_030 0.0733575886 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
7 Hb_010042_030 0.0737536137 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
8 Hb_001821_150 0.0747809281 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
9 Hb_001703_050 0.0766473967 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_002007_260 0.0772658186 - - beta-mannosidase, putative [Ricinus communis]
11 Hb_030982_010 0.0783202668 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003097_140 0.0829495723 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
13 Hb_031527_080 0.0833356945 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
14 Hb_008289_040 0.0835796742 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
15 Hb_021165_010 0.0845309996 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
16 Hb_001587_030 0.0867514252 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
17 Hb_121089_030 0.0871740985 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_000085_260 0.0900786872 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
19 Hb_009615_160 0.0903414167 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
20 Hb_000320_290 0.0923307109 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]

Gene co-expression network

sample Hb_003038_040 Hb_003038_040 Hb_003994_220 Hb_003994_220 Hb_003038_040--Hb_003994_220 Hb_000161_210 Hb_000161_210 Hb_003038_040--Hb_000161_210 Hb_001097_040 Hb_001097_040 Hb_003038_040--Hb_001097_040 Hb_065500_020 Hb_065500_020 Hb_003038_040--Hb_065500_020 Hb_001159_030 Hb_001159_030 Hb_003038_040--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_003038_040--Hb_010042_030 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_031527_080 Hb_031527_080 Hb_003994_220--Hb_031527_080 Hb_003097_140 Hb_003097_140 Hb_003994_220--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_007982_030 Hb_007982_030 Hb_000161_210--Hb_007982_030 Hb_001821_150 Hb_001821_150 Hb_000161_210--Hb_001821_150 Hb_000352_300 Hb_000352_300 Hb_000161_210--Hb_000352_300 Hb_000161_210--Hb_001703_050 Hb_030982_010 Hb_030982_010 Hb_000161_210--Hb_030982_010 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040 Hb_000085_260 Hb_000085_260 Hb_001159_030--Hb_000085_260 Hb_001159_030--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_001159_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_001159_030--Hb_002007_260 Hb_010042_030--Hb_000085_260 Hb_010042_030--Hb_005062_110 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40411 7.8198 8.96239 15.9245 6.38298 7.08156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24172 2.89989 6.32645 11.7776 8.30065

CAGE analysis