Hb_007137_050

Information

Type -
Description -
Location Contig7137: 88773-92803
Sequence    

Annotation

kegg
ID tcc:TCM_000548
description Uncharacterized protein isoform 1
nr
ID XP_007047148.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID Q6DE58
description Autophagy-related protein 101 OS=Xenopus laevis GN=atg101 PE=2 SV=1
trembl
ID A0A061DG75
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_000548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55398: 89719-92777 , PASA_asmbl_55399: 88836-92777
cDNA
(Sanger)
(ID:Location)		 049_I05.ab1: 88893-91035

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007137_050 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_188063_050 0.0635267269 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
3 Hb_000085_450 0.066790113 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
4 Hb_001097_040 0.0745813097 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
5 Hb_010042_030 0.0778021487 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
6 Hb_002740_090 0.0779112845 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
7 Hb_000579_130 0.0797576142 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000622_110 0.0825923012 - - cmp-sialic acid transporter, putative [Ricinus communis]
9 Hb_001085_080 0.0828813349 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
10 Hb_003055_040 0.0853066247 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
11 Hb_086063_020 0.0870296378 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
12 Hb_015026_130 0.0879101115 - - quinone oxidoreductase, putative [Ricinus communis]
13 Hb_007286_020 0.0905630186 - - hypothetical protein L484_010675 [Morus notabilis]
14 Hb_002995_040 0.0923022128 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
15 Hb_000152_700 0.0926542831 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
16 Hb_000256_230 0.092836758 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
17 Hb_000258_110 0.0930428062 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
18 Hb_003020_100 0.0930959557 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
19 Hb_001558_040 0.0936070542 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
20 Hb_004480_020 0.0942703055 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]

Gene co-expression network

sample Hb_007137_050 Hb_007137_050 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_188063_050--Hb_000320_290 Hb_000258_110 Hb_000258_110 Hb_188063_050--Hb_000258_110 Hb_086063_020 Hb_086063_020 Hb_188063_050--Hb_086063_020 Hb_188063_050--Hb_002740_090 Hb_000243_300 Hb_000243_300 Hb_188063_050--Hb_000243_300 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_000085_450--Hb_086063_020 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_010042_030--Hb_000579_130 Hb_010042_030--Hb_000320_290 Hb_002740_090--Hb_086063_020 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_000579_130--Hb_001085_080 Hb_001558_040 Hb_001558_040 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_000579_130--Hb_002007_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8012 23.6385 21.5797 48.5558 14.4865 17.3469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7698 10.5214 8.63471 32.0352 23.2919

CAGE analysis