Hb_000703_330

Information

Type -
Description -
Location Contig703: 299207-304605
Sequence    

Annotation

kegg
ID rcu:RCOM_0536570
description hypothetical protein
nr
ID XP_002521590.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SS37
description Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=2 SV=1
trembl
ID B9S6H1
description Reticulon-like protein OS=Ricinus communis GN=RCOM_0536570 PE=4 SV=1
Gene Ontology
ID GO:0005739
description reticulon-like protein b8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54969: 299239-304447 , PASA_asmbl_54970: 302797-302979 , PASA_asmbl_54971: 303240-303396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007416_070 0.06538856 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
3 Hb_008289_040 0.0660388843 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
4 Hb_000009_060 0.0712407244 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
5 Hb_000197_190 0.0767858067 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
6 Hb_065968_010 0.0784963486 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
7 Hb_002639_030 0.078671286 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
8 Hb_000165_080 0.0797507579 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_002686_200 0.080628344 - - glucosidase II beta subunit, putative [Ricinus communis]
10 Hb_001021_010 0.0813563426 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
11 Hb_001250_050 0.0822154468 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
12 Hb_001279_190 0.082232536 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
13 Hb_002552_040 0.0827107804 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
14 Hb_000173_130 0.0828212323 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
15 Hb_004837_280 0.0834687084 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
16 Hb_001616_070 0.0846374494 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
17 Hb_002740_090 0.0849744486 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
18 Hb_000389_030 0.0858941341 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
19 Hb_001633_080 0.0878046772 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
20 Hb_159809_070 0.0892534212 - - phospholipase A-2-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000703_330 Hb_000703_330 Hb_007416_070 Hb_007416_070 Hb_000703_330--Hb_007416_070 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000009_060 Hb_000009_060 Hb_000703_330--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_000703_330--Hb_000197_190 Hb_065968_010 Hb_065968_010 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_007416_070--Hb_000009_060 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_001799_060 Hb_001799_060 Hb_000197_190--Hb_001799_060 Hb_000197_190--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000197_190--Hb_001957_010 Hb_000197_190--Hb_000009_060 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_065968_010--Hb_001957_010 Hb_002808_020 Hb_002808_020 Hb_002639_030--Hb_002808_020 Hb_004837_280 Hb_004837_280 Hb_002639_030--Hb_004837_280 Hb_002687_200 Hb_002687_200 Hb_002639_030--Hb_002687_200 Hb_001226_130 Hb_001226_130 Hb_002639_030--Hb_001226_130 Hb_002639_030--Hb_002552_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03951 5.74797 9.93758 14.3115 3.5741 4.44175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42074 4.70999 4.15147 11.6241 7.7018

CAGE analysis