Hb_000197_190

Information

Type -
Description -
Location Contig197: 225558-232545
Sequence    

Annotation

kegg
ID rcu:RCOM_1448090
description diaminopimelate decarboxylase, putative (EC:4.1.1.20)
nr
ID XP_012067238.1
description PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q94A94
description Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1
trembl
ID A0A067LCH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26782 PE=3 SV=1
Gene Ontology
ID GO:0008836
description diaminopimelate decarboxylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_190 0.0 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
2 Hb_001799_060 0.0749391644 - - Rab6 [Hevea brasiliensis]
3 Hb_065968_010 0.0764982675 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
4 Hb_000703_330 0.0767858067 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001957_010 0.0778468328 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
6 Hb_000009_060 0.0784312055 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
7 Hb_007416_070 0.0785551308 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
8 Hb_001616_070 0.0855224108 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
9 Hb_002686_200 0.0871759127 - - glucosidase II beta subunit, putative [Ricinus communis]
10 Hb_000367_180 0.091391641 - - Heparanase-2, putative [Ricinus communis]
11 Hb_000800_090 0.0928703151 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_009615_060 0.0967966446 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
13 Hb_002093_060 0.0978059984 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_002631_130 0.0984178309 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
15 Hb_001493_150 0.0988397875 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
16 Hb_003605_020 0.1013449444 - - exocyst complex component sec6, putative [Ricinus communis]
17 Hb_001021_010 0.1016750649 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
18 Hb_005701_120 0.1025730001 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
19 Hb_005648_010 0.103076006 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_000173_130 0.1036256367 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000197_190 Hb_000197_190 Hb_001799_060 Hb_001799_060 Hb_000197_190--Hb_001799_060 Hb_065968_010 Hb_065968_010 Hb_000197_190--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_000197_190--Hb_000703_330 Hb_001957_010 Hb_001957_010 Hb_000197_190--Hb_001957_010 Hb_000009_060 Hb_000009_060 Hb_000197_190--Hb_000009_060 Hb_007416_070 Hb_007416_070 Hb_000197_190--Hb_007416_070 Hb_001946_310 Hb_001946_310 Hb_001799_060--Hb_001946_310 Hb_005648_010 Hb_005648_010 Hb_001799_060--Hb_005648_010 Hb_000800_090 Hb_000800_090 Hb_001799_060--Hb_000800_090 Hb_004880_150 Hb_004880_150 Hb_001799_060--Hb_004880_150 Hb_000165_080 Hb_000165_080 Hb_001799_060--Hb_000165_080 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_065968_010--Hb_001957_010 Hb_000703_330--Hb_007416_070 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000703_330--Hb_000009_060 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_001957_010--Hb_003605_020 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_000009_060--Hb_007416_070 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68291 2.81108 7.60496 11.3104 2.61626 2.98891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96704 4.15025 4.21173 10.5079 7.15734

CAGE analysis