Hb_000009_060

Information

Type -
Description -
Location Contig9: 60660-66462
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03860g
description POPTRDRAFT_720702; ribophorin 1 family protein
nr
ID XP_012093268.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
swissprot
ID Q9ZUA0
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1
trembl
ID A0A067L7J4
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Jatropha curcas GN=JCGZ_20057 PE=3 SV=1
Gene Ontology
ID GO:0005774
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61823: 60606-66354 , PASA_asmbl_61824: 63006-63186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_060 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
2 Hb_001616_070 0.0523545335 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
3 Hb_001021_010 0.0585296897 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
4 Hb_000703_330 0.0712407244 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018845_010 0.0757034684 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_007416_070 0.0766370667 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
7 Hb_000389_030 0.0781831619 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
8 Hb_000197_190 0.0784312055 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
9 Hb_002028_190 0.0853239442 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
10 Hb_031527_080 0.0857363701 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
11 Hb_000256_230 0.0919302979 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
12 Hb_001097_040 0.1019782103 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
13 Hb_000683_050 0.1020720387 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
14 Hb_003994_220 0.1021686523 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
15 Hb_000173_130 0.1047095827 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
16 Hb_021576_070 0.1048378539 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
17 Hb_065968_010 0.1048470199 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
18 Hb_000494_030 0.105245483 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
19 Hb_004525_040 0.105356901 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
20 Hb_000367_180 0.1058062154 - - Heparanase-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000009_060 Hb_000009_060 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_000703_330 Hb_000703_330 Hb_000009_060--Hb_000703_330 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_007416_070 Hb_007416_070 Hb_000009_060--Hb_007416_070 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_003683_130 Hb_003683_130 Hb_001616_070--Hb_003683_130 Hb_001616_070--Hb_000703_330 Hb_000220_110 Hb_000220_110 Hb_001616_070--Hb_000220_110 Hb_000197_190 Hb_000197_190 Hb_001616_070--Hb_000197_190 Hb_001616_070--Hb_007416_070 Hb_001021_010--Hb_000389_030 Hb_001097_040 Hb_001097_040 Hb_001021_010--Hb_001097_040 Hb_003994_220 Hb_003994_220 Hb_001021_010--Hb_003994_220 Hb_001021_010--Hb_000703_330 Hb_004525_040 Hb_004525_040 Hb_001021_010--Hb_004525_040 Hb_000703_330--Hb_007416_070 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000703_330--Hb_000197_190 Hb_065968_010 Hb_065968_010 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_000375_300 Hb_000375_300 Hb_018845_010--Hb_000375_300 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_018845_010--Hb_007416_070 Hb_018845_010--Hb_001616_070 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_000256_230 Hb_000256_230 Hb_000389_030--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_000389_030--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_000389_030--Hb_000665_170 Hb_000389_030--Hb_004525_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.33869 14.4 28.9288 53.2176 10.6625 9.98782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.29166 11.596 13.7223 35.5924 21.4278

CAGE analysis