Hb_004218_130

Information

Type -
Description -
Location Contig4218: 141902-145306
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19810g
description POPTRDRAFT_647290; Uridine 5'-monophosphate synthase family protein
nr
ID XP_012068641.1
description PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
swissprot
ID Q42942
description Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum GN=PYR5-6 PE=2 SV=1
trembl
ID A0A067KZU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24517 PE=3 SV=1
Gene Ontology
ID GO:0016740
description uridine 5 -monophosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_130 0.0 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
2 Hb_000098_180 0.0808829613 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
3 Hb_001545_130 0.0860799983 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_018845_010 0.0865018402 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
5 Hb_003929_180 0.0899789375 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
6 Hb_000000_480 0.0925021214 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
7 Hb_002739_120 0.0973057049 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
8 Hb_002687_200 0.0976057925 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008725_270 0.1016659558 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
10 Hb_004223_140 0.1018392004 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
11 Hb_000197_180 0.1027281883 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
12 Hb_000260_400 0.1054081431 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
13 Hb_002641_160 0.1073069372 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002217_080 0.1073939938 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
15 Hb_003740_020 0.1075380471 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_003680_220 0.1076151837 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
17 Hb_012760_090 0.1083477161 - - Aspartic proteinase-like protein 1 [Morus notabilis]
18 Hb_001754_050 0.1085994471 - - protein arginine n-methyltransferase, putative [Ricinus communis]
19 Hb_034507_060 0.1090809953 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
20 Hb_009296_020 0.1090928279 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_004218_130 Hb_004218_130 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_000375_300 Hb_000375_300 Hb_018845_010--Hb_000375_300 Hb_000009_060 Hb_000009_060 Hb_018845_010--Hb_000009_060 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_007416_070 Hb_007416_070 Hb_018845_010--Hb_007416_070 Hb_001616_070 Hb_001616_070 Hb_018845_010--Hb_001616_070 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004223_140 Hb_004223_140 Hb_003929_180--Hb_004223_140 Hb_000012_080 Hb_000012_080 Hb_003929_180--Hb_000012_080 Hb_003929_180--Hb_006351_020 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29322 4.80243 9.98924 11.9383 1.42692 1.75175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54593 1.6724 1.92535 6.37198 5.93201

CAGE analysis