Hb_000003_030

Information

Type -
Description -
Location Contig3: 15384-17162
Sequence    

Annotation

kegg
ID rcu:RCOM_1454170
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002513136.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID B9RGI4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1454170 PE=4 SV=1
Gene Ontology
ID GO:0005618
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31352: 15267-15368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001545_130 0.0902195768 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
3 Hb_019654_060 0.0930110222 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
4 Hb_003430_080 0.0957894033 - - zinc finger protein, putative [Ricinus communis]
5 Hb_004032_210 0.1018278102 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000581_030 0.1046411475 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000000_330 0.1052534439 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
8 Hb_000134_120 0.1053576604 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
9 Hb_003929_180 0.1107422905 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
10 Hb_004218_130 0.1117993473 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
11 Hb_000940_210 0.1149537463 - - cyclophilin [Hevea brasiliensis]
12 Hb_003740_020 0.1163283763 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000258_220 0.1308165416 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
14 Hb_164010_050 0.1316193808 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
15 Hb_000740_090 0.1335624292 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002641_160 0.1344695152 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004223_140 0.1352733005 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_074399_010 0.1362616881 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
19 Hb_003540_080 0.1362921503 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000309_030 0.1375692939 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000003_030 Hb_000003_030 Hb_001545_130 Hb_001545_130 Hb_000003_030--Hb_001545_130 Hb_019654_060 Hb_019654_060 Hb_000003_030--Hb_019654_060 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_004032_210 Hb_004032_210 Hb_000003_030--Hb_004032_210 Hb_000581_030 Hb_000581_030 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_001545_130--Hb_004032_210 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_019654_060--Hb_000581_030 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_023226_030 Hb_023226_030 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_003929_180 Hb_003929_180 Hb_004032_210--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_004032_210--Hb_004223_140 Hb_004032_210--Hb_006351_020 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_074399_010 Hb_074399_010 Hb_000000_330--Hb_074399_010 Hb_006775_120 Hb_006775_120 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_002783_220 Hb_002783_220 Hb_000000_330--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93509 2.49125 7.84506 10.6296 1.12742 1.59227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0577 0.688067 1.10915 4.55444 3.49407

CAGE analysis