Hb_006775_120

Information

Type -
Description -
Location Contig6775: 93578-96928
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03040g
description POPTRDRAFT_888070; hypothetical protein
nr
ID BAD53243.1
description exonuclease-like protein [Oryza sativa Japonica Group]
swissprot
ID Q8L6Z7
description Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2
trembl
ID B9I129
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03040g PE=4 SV=1
Gene Ontology
ID GO:0016788
description 5 -3 exonuclease family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53621: 95313-96870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_120 0.0 - - exonuclease-like protein [Oryza sativa Japonica Group]
2 Hb_000000_330 0.0892824509 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
3 Hb_000926_060 0.0973259004 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005754_040 0.0975802018 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
5 Hb_000364_170 0.0989397978 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
6 Hb_000395_280 0.0999453288 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
7 Hb_002783_220 0.1022304062 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
8 Hb_000579_080 0.1079413445 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
9 Hb_000057_110 0.1103025467 - - PREDICTED: kinesin-13A [Jatropha curcas]
10 Hb_008725_270 0.1136084574 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
11 Hb_003680_220 0.1146569469 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
12 Hb_000830_020 0.1158884143 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
13 Hb_005333_060 0.1180687482 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
14 Hb_003605_020 0.1188749232 - - exocyst complex component sec6, putative [Ricinus communis]
15 Hb_001053_190 0.1202018012 - - ADP,ATP carrier protein, putative [Ricinus communis]
16 Hb_000684_030 0.1208130785 - - syntaxin, putative [Ricinus communis]
17 Hb_001102_070 0.1215765569 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
18 Hb_000331_570 0.1216317985 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
19 Hb_002552_040 0.1230700296 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
20 Hb_000072_300 0.1235673475 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_006775_120 Hb_006775_120 Hb_000000_330 Hb_000000_330 Hb_006775_120--Hb_000000_330 Hb_000926_060 Hb_000926_060 Hb_006775_120--Hb_000926_060 Hb_005754_040 Hb_005754_040 Hb_006775_120--Hb_005754_040 Hb_000364_170 Hb_000364_170 Hb_006775_120--Hb_000364_170 Hb_000395_280 Hb_000395_280 Hb_006775_120--Hb_000395_280 Hb_002783_220 Hb_002783_220 Hb_006775_120--Hb_002783_220 Hb_074399_010 Hb_074399_010 Hb_000000_330--Hb_074399_010 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_000000_330--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_011381_040 Hb_011381_040 Hb_000364_170--Hb_011381_040 Hb_000057_110 Hb_000057_110 Hb_000364_170--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000364_170--Hb_000200_300 Hb_000364_170--Hb_002783_220 Hb_000364_170--Hb_005754_040 Hb_000395_280--Hb_003605_020 Hb_065968_010 Hb_065968_010 Hb_000395_280--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000395_280--Hb_001957_010 Hb_002552_040 Hb_002552_040 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000987_040 Hb_000987_040 Hb_002783_220--Hb_000987_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281286 0.221716 1.55273 0.986807 0.234409 0.403102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.403616 0.230916 0.431332 0.704284 0.720054

CAGE analysis