Hb_005754_040

Information

Type -
Description -
Location Contig5754: 64461-79682
Sequence    

Annotation

kegg
ID rcu:RCOM_0723150
description catalytic, putative
nr
ID XP_012075397.1
description PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
swissprot
ID O32125
description Uncharacterized hydrolase YutF OS=Bacillus subtilis (strain 168) GN=yutF PE=1 SV=1
trembl
ID A0A067KJG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10677 PE=4 SV=1
Gene Ontology
ID GO:0009507
description haloacid dehalogenase-like hydrolase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49647: 64463-78027 , PASA_asmbl_49648: 79316-79607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_040 0.0 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
2 Hb_000395_280 0.0708646219 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
3 Hb_003605_020 0.0880245377 - - exocyst complex component sec6, putative [Ricinus communis]
4 Hb_002676_120 0.0959986227 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
5 Hb_006775_120 0.0975802018 - - exonuclease-like protein [Oryza sativa Japonica Group]
6 Hb_000072_300 0.0979674151 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
7 Hb_000684_030 0.0998488096 - - syntaxin, putative [Ricinus communis]
8 Hb_011716_010 0.1023684577 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
9 Hb_000364_170 0.103686273 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
10 Hb_003540_050 0.1037512897 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
11 Hb_000742_010 0.1038548258 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_065968_010 0.1042351505 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
13 Hb_000057_110 0.1046712019 - - PREDICTED: kinesin-13A [Jatropha curcas]
14 Hb_002193_060 0.1059313744 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
15 Hb_007850_030 0.1072225118 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
16 Hb_001221_030 0.108032826 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
17 Hb_001633_080 0.1081767449 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
18 Hb_001227_120 0.108769184 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
19 Hb_133004_010 0.1093905219 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
20 Hb_001205_080 0.110083335 - - Protein FAM96B, putative [Ricinus communis]

Gene co-expression network

sample Hb_005754_040 Hb_005754_040 Hb_000395_280 Hb_000395_280 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_000395_280--Hb_003605_020 Hb_065968_010 Hb_065968_010 Hb_000395_280--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000395_280--Hb_001957_010 Hb_002552_040 Hb_002552_040 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_003605_020--Hb_065968_010 Hb_003605_020--Hb_001957_010 Hb_000174_260 Hb_000174_260 Hb_003605_020--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_009193_090 Hb_009193_090 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_002676_120--Hb_000395_280 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_000000_330 Hb_000000_330 Hb_006775_120--Hb_000000_330 Hb_000926_060 Hb_000926_060 Hb_006775_120--Hb_000926_060 Hb_000364_170 Hb_000364_170 Hb_006775_120--Hb_000364_170 Hb_006775_120--Hb_000395_280 Hb_002783_220 Hb_002783_220 Hb_006775_120--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_002740_080 Hb_002740_080 Hb_000072_300--Hb_002740_080 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000057_110 Hb_000057_110 Hb_000684_030--Hb_000057_110 Hb_000684_030--Hb_000174_260 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000200_300 Hb_000200_300 Hb_000684_030--Hb_000200_300 Hb_000684_030--Hb_003605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16084 2.32805 12.6818 11.8761 2.30367 3.33721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1677 4.38129 3.61414 8.42058 6.43484

CAGE analysis