Hb_000359_290

Information

Type -
Description -
Location Contig359: 287232-294955
Sequence    

Annotation

kegg
ID rcu:RCOM_0539710
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative
nr
ID XP_002525884.1
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q8H184
description Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1
trembl
ID B9SIR5
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative OS=Ricinus communis GN=RCOM_0539710 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at1g06470

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37071: 287255-310445 , PASA_asmbl_37072: 287255-310445 , PASA_asmbl_37073: 287653-287986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_290 0.0 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
2 Hb_000072_300 0.0836389595 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
3 Hb_000796_150 0.0907572445 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
4 Hb_000140_340 0.0942178256 - - PREDICTED: protein ABIL1 [Jatropha curcas]
5 Hb_001087_030 0.100520671 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_004754_050 0.1016977876 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
7 Hb_011310_110 0.1027034242 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
8 Hb_003929_170 0.1073918055 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
9 Hb_000152_600 0.1082827921 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
10 Hb_003935_060 0.109510597 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
11 Hb_000244_180 0.1105247318 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005535_080 0.1136032883 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
13 Hb_000212_120 0.1137036941 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
14 Hb_001876_040 0.1144318202 - - PREDICTED: mucin-5B [Jatropha curcas]
15 Hb_002157_120 0.1168503894 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000058_130 0.1171216088 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_010672_020 0.1172431954 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
18 Hb_001633_200 0.1176539955 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
19 Hb_000359_310 0.1181769817 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
20 Hb_003760_030 0.118623066 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_290 Hb_000359_290 Hb_000072_300 Hb_000072_300 Hb_000359_290--Hb_000072_300 Hb_000796_150 Hb_000796_150 Hb_000359_290--Hb_000796_150 Hb_000140_340 Hb_000140_340 Hb_000359_290--Hb_000140_340 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_002740_080 Hb_002740_080 Hb_000072_300--Hb_002740_080 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000796_150--Hb_000072_300 Hb_000665_180 Hb_000665_180 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_000796_150--Hb_000140_340 Hb_001876_040 Hb_001876_040 Hb_000140_340--Hb_001876_040 Hb_000189_480 Hb_000189_480 Hb_000140_340--Hb_000189_480 Hb_022693_130 Hb_022693_130 Hb_000140_340--Hb_022693_130 Hb_000212_120 Hb_000212_120 Hb_000140_340--Hb_000212_120 Hb_003929_170 Hb_003929_170 Hb_001087_030--Hb_003929_170 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_007975_060 Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_004754_050--Hb_000058_130 Hb_010672_020 Hb_010672_020 Hb_011310_110--Hb_010672_020 Hb_006120_050 Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_007545_010 Hb_007545_010 Hb_011310_110--Hb_007545_010 Hb_011310_110--Hb_000049_020 Hb_000705_230 Hb_000705_230 Hb_011310_110--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_011310_110--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7123 7.54646 19.4687 25.4286 7.0145 8.80988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78221 8.80299 7.46811 5.24065 14.9168

CAGE analysis