Hb_000665_180

Information

Type -
Description -
Location Contig665: 182767-186536
Sequence    

Annotation

kegg
ID rcu:RCOM_0923260
description hypothetical protein
nr
ID XP_012068149.1
description PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q8VY97
description ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1
trembl
ID A0A067LNU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08517 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53216: 182848-186493 , PASA_asmbl_53217: 187269-192265 , PASA_asmbl_53218: 187319-188953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_180 0.0 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
2 Hb_000008_340 0.0765883462 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
3 Hb_000395_110 0.078539183 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
4 Hb_000638_070 0.0787904557 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
5 Hb_185830_060 0.0823346623 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
6 Hb_002955_020 0.0851545822 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_002193_060 0.0907570445 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
8 Hb_000012_080 0.0935598312 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
9 Hb_000399_060 0.0947509202 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
10 Hb_000796_150 0.0960327308 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
11 Hb_000417_390 0.0967818083 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
12 Hb_000049_160 0.0979261919 - - tyrosine decarboxylase family protein [Populus trichocarpa]
13 Hb_000197_020 0.0979357416 - - PREDICTED: protein RER1A [Jatropha curcas]
14 Hb_003540_080 0.0982666444 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000057_110 0.0986943758 - - PREDICTED: kinesin-13A [Jatropha curcas]
16 Hb_000665_170 0.0996928753 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
17 Hb_000007_090 0.1005481256 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
18 Hb_005701_120 0.1027092579 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
19 Hb_000585_110 0.1037354193 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
20 Hb_000260_510 0.1038162892 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_180 Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_000860_060 Hb_000860_060 Hb_000008_340--Hb_000860_060 Hb_000585_110 Hb_000585_110 Hb_000008_340--Hb_000585_110 Hb_000007_090 Hb_000007_090 Hb_000008_340--Hb_000007_090 Hb_000008_340--Hb_002955_020 Hb_000049_160 Hb_000049_160 Hb_000008_340--Hb_000049_160 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_010672_020 Hb_010672_020 Hb_000395_110--Hb_010672_020 Hb_000395_110--Hb_185830_060 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000395_110--Hb_002193_060 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_000920_310 Hb_000920_310 Hb_002955_020--Hb_000920_310 Hb_002955_020--Hb_000860_060 Hb_002955_020--Hb_000049_160 Hb_002955_020--Hb_001486_040 Hb_002955_020--Hb_000638_070 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43771 3.44392 11.1378 18.9514 2.88265 4.81659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18877 4.13779 5.13065 6.14893 12.1934

CAGE analysis