Hb_000920_310

Information

Type -
Description -
Location Contig920: 197937-205044
Sequence    

Annotation

kegg
ID rcu:RCOM_1452650
description Ran GTPase binding protein, putative
nr
ID XP_002513064.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9RGB2
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_1452650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ran gtpase binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62441: 197719-206508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_310 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_000684_390 0.0672467117 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
3 Hb_002955_020 0.0741278731 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
4 Hb_000860_060 0.0920551793 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
5 Hb_000417_390 0.0960709334 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
6 Hb_004306_110 0.1012644201 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
7 Hb_000000_310 0.1020911641 - - metalloendopeptidase, putative [Ricinus communis]
8 Hb_000665_180 0.1038686845 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
9 Hb_000638_070 0.1044618571 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
10 Hb_000585_110 0.1047215441 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
11 Hb_001976_030 0.1051102185 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
12 Hb_001628_120 0.1053011035 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
13 Hb_130589_010 0.1060617828 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_000395_110 0.1063546854 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_003746_010 0.1110504067 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001017_030 0.1114299277 - - copine, putative [Ricinus communis]
17 Hb_001882_020 0.1117404214 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
18 Hb_000008_340 0.1126772788 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
19 Hb_009674_050 0.1134092541 - - Endosomal P24A protein precursor, putative [Ricinus communis]
20 Hb_026549_070 0.1141536371 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_310 Hb_000920_310 Hb_000684_390 Hb_000684_390 Hb_000920_310--Hb_000684_390 Hb_002955_020 Hb_002955_020 Hb_000920_310--Hb_002955_020 Hb_000860_060 Hb_000860_060 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000000_310 Hb_000000_310 Hb_000920_310--Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_000665_180 Hb_000665_180 Hb_002955_020--Hb_000665_180 Hb_002955_020--Hb_000860_060 Hb_000049_160 Hb_000049_160 Hb_002955_020--Hb_000049_160 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_001080_300 Hb_001080_300 Hb_000417_390--Hb_001080_300 Hb_001029_040 Hb_001029_040 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040 Hb_026549_070 Hb_026549_070 Hb_004306_110--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_000139_300 Hb_000139_300 Hb_004306_110--Hb_000139_300 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000000_310--Hb_003682_070 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000120_860 Hb_000120_860 Hb_000000_310--Hb_000120_860 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17166 1.20278 2.7833 5.47427 0.590838 1.49324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14145 0.959498 1.62337 1.59419 5.45459

CAGE analysis