Hb_004306_110

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig4306: 70629-83167
Sequence    

Annotation

kegg
ID rcu:RCOM_1719880
description transporter, putative
nr
ID XP_012085100.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
swissprot
ID F4J7S8
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis thaliana GN=SFH9 PE=2 SV=1
trembl
ID A0A067JR72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42182: 73449-75164 , PASA_asmbl_42183: 82329-82885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_110 0.0 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
2 Hb_026549_070 0.0745207072 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
3 Hb_000062_400 0.0890785866 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000139_300 0.0903218282 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
5 Hb_000390_190 0.098254192 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001976_030 0.0985459197 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
7 Hb_000920_310 0.1012644201 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000684_390 0.1021223185 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
9 Hb_009913_040 0.1065568742 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_001628_120 0.1106508016 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
11 Hb_002164_020 0.1112151002 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011926_040 0.1122228461 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_009079_050 0.1132314684 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
14 Hb_000107_250 0.1144957445 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
15 Hb_073973_120 0.1153516724 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000638_070 0.1168721729 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
17 Hb_000152_440 0.1174156143 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
18 Hb_042083_040 0.118009421 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001049_150 0.1181706047 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
20 Hb_002097_100 0.1207966953 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_004306_110 Hb_004306_110 Hb_026549_070 Hb_026549_070 Hb_004306_110--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_000139_300 Hb_000139_300 Hb_004306_110--Hb_000139_300 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_026549_070--Hb_000139_300 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_001049_150 Hb_001049_150 Hb_000062_400--Hb_001049_150 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_000390_190--Hb_001976_030 Hb_000390_190--Hb_000920_310 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001628_120 Hb_001628_120 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000920_310--Hb_000684_390 Hb_002955_020 Hb_002955_020 Hb_000920_310--Hb_002955_020 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_000000_310 Hb_000000_310 Hb_000920_310--Hb_000000_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43281 1.03305 3.7858 6.69458 0.953412 1.2468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.663685 1.43 1.49646 1.02635 6.41058

CAGE analysis