Hb_002164_020

Information

Type -
Description -
Location Contig2164: 38153-43200
Sequence    

Annotation

kegg
ID rcu:RCOM_1313090
description hypothetical protein
nr
ID XP_002518895.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6N075
description Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2
trembl
ID B9RYS6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description molybdate-anion transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22379: 38256-40107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002164_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001493_060 0.0836853996 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
3 Hb_026549_070 0.0962766072 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
4 Hb_009079_050 0.1000620088 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
5 Hb_000139_300 0.1075208554 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
6 Hb_000011_220 0.1095073717 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
7 Hb_009913_040 0.1104441673 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
8 Hb_004306_110 0.1112151002 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
9 Hb_000270_660 0.1119635415 - - purine permease, putative [Ricinus communis]
10 Hb_011310_040 0.1142175692 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
11 Hb_000920_310 0.1200042848 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_001969_140 0.1201375342 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
13 Hb_001049_150 0.1223046777 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
14 Hb_002157_270 0.1226248847 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
15 Hb_177343_010 0.1280312761 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
16 Hb_000062_400 0.1292330562 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011926_040 0.1302439825 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_001216_110 0.1315649514 - - PREDICTED: protein GPR107-like [Jatropha curcas]
19 Hb_005348_110 0.1336796442 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
20 Hb_008025_010 0.1340290209 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_002164_020 Hb_002164_020 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_009079_050 Hb_009079_050 Hb_002164_020--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_002596_080 Hb_002596_080 Hb_001493_060--Hb_002596_080 Hb_001493_060--Hb_009079_050 Hb_000580_110 Hb_000580_110 Hb_001493_060--Hb_000580_110 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_009079_050--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_009079_050--Hb_001195_660 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_004306_110 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_009674_050 Hb_009674_050 Hb_000011_220--Hb_009674_050 Hb_005348_110 Hb_005348_110 Hb_000011_220--Hb_005348_110 Hb_003746_010 Hb_003746_010 Hb_000011_220--Hb_003746_010 Hb_010175_030 Hb_010175_030 Hb_000011_220--Hb_010175_030 Hb_059741_010 Hb_059741_010 Hb_000011_220--Hb_059741_010 Hb_011926_040 Hb_011926_040 Hb_009913_040--Hb_011926_040 Hb_000173_060 Hb_000173_060 Hb_009913_040--Hb_000173_060 Hb_009913_040--Hb_004306_110 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23076 0.844162 3.81445 9.54827 1.48085 1.6614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.868679 0.773433 1.80719 2.22575 8.96792

CAGE analysis