Hb_009913_040

Information

Type -
Description -
Location Contig9913: 43761-47123
Sequence    

Annotation

kegg
ID rcu:RCOM_1411850
description ptm1, putative
nr
ID XP_012071370.1
description PREDICTED: transmembrane protein 87B [Jatropha curcas]
swissprot
ID Q8BKU8
description Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1
trembl
ID A0A067L472
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05056 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transmembrane protein 87b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64785: 43943-46726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009913_040 0.0 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
2 Hb_011926_040 0.0838877426 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_000173_060 0.0906787097 - - Dual specificity protein phosphatase, putative [Ricinus communis]
4 Hb_004306_110 0.1065568742 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
5 Hb_002164_020 0.1104441673 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000139_300 0.1180461784 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
7 Hb_008025_010 0.1270571872 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
8 Hb_001049_150 0.1297351152 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
9 Hb_026549_070 0.1318230041 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
10 Hb_007192_020 0.1318476815 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
11 Hb_000152_440 0.1325849723 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
12 Hb_000096_190 0.1331245001 - - unknown [Lotus japonicus]
13 Hb_000152_190 0.1335445293 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
14 Hb_000094_290 0.1339004662 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
15 Hb_006006_060 0.1341493801 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
16 Hb_011310_040 0.1365138896 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
17 Hb_003540_080 0.1369907101 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_001976_030 0.1370634204 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
19 Hb_005074_040 0.1371026974 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000622_350 0.1376251385 - - PREDICTED: protein ABIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_009913_040 Hb_009913_040 Hb_011926_040 Hb_011926_040 Hb_009913_040--Hb_011926_040 Hb_000173_060 Hb_000173_060 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010 Hb_000399_060 Hb_000399_060 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_000094_290 Hb_000094_290 Hb_000173_060--Hb_000094_290 Hb_000622_350 Hb_000622_350 Hb_000173_060--Hb_000622_350 Hb_003058_100 Hb_003058_100 Hb_000173_060--Hb_003058_100 Hb_000300_090 Hb_000300_090 Hb_000173_060--Hb_000300_090 Hb_026549_070 Hb_026549_070 Hb_004306_110--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_004306_110--Hb_000139_300 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_002164_020--Hb_026549_070 Hb_009079_050 Hb_009079_050 Hb_002164_020--Hb_009079_050 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_000139_300--Hb_026549_070 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_008025_010--Hb_005074_040 Hb_008025_010--Hb_003058_100 Hb_014497_010 Hb_014497_010 Hb_008025_010--Hb_014497_010 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_002942_230 Hb_002942_230 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36722 0.994754 9.11813 17.3622 2.51605 4.37565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82489 2.41025 2.5956 2.8282 11.6079

CAGE analysis