Hb_000086_210

Information

Type -
Description -
Location Contig86: 176997-182462
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03760g
description POPTRDRAFT_551020; ABC transporter family protein
nr
ID AIU41666.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q3EDJ0
description ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1
trembl
ID A0A097P9U8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI19 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60717: 177006-182434 , PASA_asmbl_60719: 177006-177639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_210 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000139_300 0.0710507435 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
3 Hb_000152_440 0.0801141652 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
4 Hb_005074_040 0.0898847863 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000749_020 0.0963287115 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
6 Hb_005563_010 0.0998689694 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
7 Hb_000935_040 0.1102891176 - - Uncharacterized protein isoform 2 [Theobroma cacao]
8 Hb_000808_150 0.1131362064 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
9 Hb_001369_100 0.1204341595 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
10 Hb_026549_070 0.1204719869 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
11 Hb_004306_110 0.121489987 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
12 Hb_001195_660 0.124440009 - - metalloendopeptidase, putative [Ricinus communis]
13 Hb_000012_080 0.1251869823 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
14 Hb_001369_010 0.1264251488 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
15 Hb_000689_050 0.127958339 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007101_260 0.1282697706 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
17 Hb_001579_300 0.1284777339 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
18 Hb_000049_160 0.1298257287 - - tyrosine decarboxylase family protein [Populus trichocarpa]
19 Hb_009079_050 0.1306295474 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
20 Hb_000096_190 0.1309053991 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_000086_210 Hb_000086_210 Hb_000139_300 Hb_000139_300 Hb_000086_210--Hb_000139_300 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_005074_040 Hb_005074_040 Hb_000086_210--Hb_005074_040 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000012_080 Hb_000012_080 Hb_000152_440--Hb_000012_080 Hb_000152_440--Hb_000935_040 Hb_000152_440--Hb_000139_300 Hb_000152_440--Hb_005074_040 Hb_001579_300 Hb_001579_300 Hb_000152_440--Hb_001579_300 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000749_020--Hb_000808_150 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_001976_030 Hb_001976_030 Hb_005563_010--Hb_001976_030 Hb_000049_180 Hb_000049_180 Hb_005563_010--Hb_000049_180 Hb_001369_100 Hb_001369_100 Hb_005563_010--Hb_001369_100 Hb_005563_010--Hb_000139_300 Hb_001628_120 Hb_001628_120 Hb_005563_010--Hb_001628_120 Hb_001369_630 Hb_001369_630 Hb_000935_040--Hb_001369_630 Hb_002007_320 Hb_002007_320 Hb_000935_040--Hb_002007_320 Hb_000935_040--Hb_000012_080 Hb_000935_040--Hb_000139_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76982 11.6087 66.5103 91.6981 6.77412 8.20213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0862 15.151 17.0927 11.3344 66.4834

CAGE analysis