Hb_002007_320

Information

Type -
Description -
Location Contig2007: 209318-217042
Sequence    

Annotation

kegg
ID rcu:RCOM_1431460
description mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative (EC:1.3.1.74)
nr
ID XP_012089064.1
description PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
swissprot
ID Q40541
description Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum GN=NPK1 PE=1 SV=1
trembl
ID B9RF57
description Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative OS=Ricinus communis GN=RCOM_1431460 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20404: 209590-212403 , PASA_asmbl_20405: 212147-212403 , PASA_asmbl_20406: 212884-213812 , PASA_asmbl_20407: 215184-215631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_320 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
2 Hb_002193_060 0.0891677644 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
3 Hb_003371_070 0.0902307105 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
4 Hb_000375_300 0.0930872045 - - PREDICTED: cyanate hydratase [Jatropha curcas]
5 Hb_000935_040 0.09323892 - - Uncharacterized protein isoform 2 [Theobroma cacao]
6 Hb_000012_080 0.0966871887 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
7 Hb_000023_310 0.1039062789 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
8 Hb_006711_090 0.1054811283 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
9 Hb_001619_060 0.1063472296 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
10 Hb_001817_100 0.1076649522 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_048476_060 0.1110720227 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
12 Hb_003602_060 0.1135730245 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
13 Hb_018845_010 0.116637531 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
14 Hb_001369_630 0.1167229623 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
15 Hb_000110_060 0.1181205952 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
16 Hb_002615_030 0.1184626795 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
17 Hb_185830_060 0.120941967 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
18 Hb_007441_080 0.1218033738 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
19 Hb_013405_070 0.1219271816 - - ferric-chelate reductase, putative [Ricinus communis]
20 Hb_000049_160 0.1236860753 - - tyrosine decarboxylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002007_320 Hb_002007_320 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_185830_060 Hb_185830_060 Hb_002193_060--Hb_185830_060 Hb_002193_060--Hb_000375_300 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_000057_130 Hb_000057_130 Hb_003371_070--Hb_000057_130 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_003371_070--Hb_000023_310 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030 Hb_000375_300--Hb_018845_010 Hb_000375_300--Hb_000007_090 Hb_000375_300--Hb_001619_060 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_001369_630 Hb_001369_630 Hb_000935_040--Hb_001369_630 Hb_000935_040--Hb_000012_080 Hb_000152_440 Hb_000152_440 Hb_000935_040--Hb_000152_440 Hb_000139_300 Hb_000139_300 Hb_000935_040--Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000935_040--Hb_000086_210 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000012_080--Hb_000395_110 Hb_002615_030 Hb_002615_030 Hb_000023_310--Hb_002615_030 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_007590_090 Hb_007590_090 Hb_000023_310--Hb_007590_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250962 0.672774 2.04379 2.89299 0.224673 0.192271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.620949 0.876628 0.848742 1.01603 1.4347

CAGE analysis