Hb_000110_060

Information

Type -
Description -
Location Contig110: 108858-111166
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08280g
description POPTRDRAFT_560734; hypothetical protein
nr
ID XP_012074878.1
description PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09026 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03039: 107184-111139 , PASA_asmbl_03042: 107807-108657
cDNA
(Sanger)
(ID:Location)		 001_P21.ab1: 107184-109380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_060 0.0 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
2 Hb_002615_030 0.0922371514 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
3 Hb_003371_070 0.1026911135 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
4 Hb_000849_120 0.1104048081 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
5 Hb_001619_060 0.1109682679 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
6 Hb_000181_460 0.1119362402 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
7 Hb_021943_090 0.1127706806 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
8 Hb_005470_030 0.1150729221 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
9 Hb_002007_320 0.1181205952 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
10 Hb_000049_160 0.1185905548 - - tyrosine decarboxylase family protein [Populus trichocarpa]
11 Hb_002486_020 0.1190258016 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000023_310 0.1195330346 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
13 Hb_001817_100 0.120015228 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
14 Hb_007590_090 0.1240762233 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
15 Hb_005016_010 0.1268531704 - - AMP dependent CoA ligase, putative [Ricinus communis]
16 Hb_003875_030 0.1279979498 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
17 Hb_005218_080 0.1285649909 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000599_210 0.1310193553 - - serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_007441_080 0.1320927045 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
20 Hb_004326_010 0.1323029337 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_060 Hb_000110_060 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_007590_090 Hb_007590_090 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_000057_130 Hb_000057_130 Hb_003371_070--Hb_000057_130 Hb_003371_070--Hb_001619_060 Hb_003371_070--Hb_000023_310 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_005348_110 Hb_005348_110 Hb_000849_120--Hb_005348_110 Hb_000375_300 Hb_000375_300 Hb_001619_060--Hb_000375_300 Hb_000049_160 Hb_000049_160 Hb_001619_060--Hb_000049_160 Hb_029920_060 Hb_029920_060 Hb_001619_060--Hb_029920_060 Hb_001301_280 Hb_001301_280 Hb_001619_060--Hb_001301_280 Hb_002193_060 Hb_002193_060 Hb_001619_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_001619_060--Hb_185830_060 Hb_000181_460--Hb_004326_010 Hb_000181_460--Hb_005016_010 Hb_010390_010 Hb_010390_010 Hb_000181_460--Hb_010390_010 Hb_177215_030 Hb_177215_030 Hb_000181_460--Hb_177215_030 Hb_003044_080 Hb_003044_080 Hb_000181_460--Hb_003044_080 Hb_003994_030 Hb_003994_030 Hb_021943_090--Hb_003994_030 Hb_000979_130 Hb_000979_130 Hb_021943_090--Hb_000979_130 Hb_000367_180 Hb_000367_180 Hb_021943_090--Hb_000367_180 Hb_000260_510 Hb_000260_510 Hb_021943_090--Hb_000260_510 Hb_000800_090 Hb_000800_090 Hb_021943_090--Hb_000800_090 Hb_000665_180 Hb_000665_180 Hb_021943_090--Hb_000665_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.55389 1.56757 4.21764 7.75788 0.267811 0.670696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88047 2.4779 3.00835 3.56041 6.66763

CAGE analysis