Hb_029920_060

Information

Type -
Description -
Location Contig29920: 64393-77111
Sequence    

Annotation

kegg
ID rcu:RCOM_0225660
description catalytic, putative
nr
ID XP_012074353.1
description PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
swissprot
ID Q54LL8
description UPF0554 protein OS=Dictyostelium discoideum GN=DDB_G0286581 PE=3 SV=1
trembl
ID A0A067KV45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08784 PE=4 SV=1
Gene Ontology
ID GO:0006807
description upf0554 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31273: 64392-71855 , PASA_asmbl_31275: 68238-71574 , PASA_asmbl_31278: 75129-76998 , PASA_asmbl_31279: 75141-76906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_060 0.0 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
2 Hb_001619_060 0.0933289214 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
3 Hb_001486_040 0.1009192797 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
4 Hb_185830_060 0.1156358457 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
5 Hb_001301_280 0.1156553231 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000365_010 0.1234435779 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
7 Hb_020390_010 0.1250557049 - - PREDICTED: expansin-A13 [Jatropha curcas]
8 Hb_000375_300 0.1262397236 - - PREDICTED: cyanate hydratase [Jatropha curcas]
9 Hb_000288_020 0.1284489809 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002615_030 0.1290585104 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
11 Hb_000599_210 0.1293584062 - - serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_002193_060 0.1296993949 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
13 Hb_005993_010 0.1299661162 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
14 Hb_004607_070 0.1331513653 - - integral membrane protein, putative [Ricinus communis]
15 Hb_011344_200 0.1354140753 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
16 Hb_000049_160 0.1357265555 - - tyrosine decarboxylase family protein [Populus trichocarpa]
17 Hb_000012_110 0.1383392692 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
18 Hb_000116_560 0.1391456844 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
19 Hb_000438_140 0.1391538798 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
20 Hb_004158_020 0.1393343296 - - Rab1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_029920_060 Hb_029920_060 Hb_001619_060 Hb_001619_060 Hb_029920_060--Hb_001619_060 Hb_001486_040 Hb_001486_040 Hb_029920_060--Hb_001486_040 Hb_185830_060 Hb_185830_060 Hb_029920_060--Hb_185830_060 Hb_001301_280 Hb_001301_280 Hb_029920_060--Hb_001301_280 Hb_000365_010 Hb_000365_010 Hb_029920_060--Hb_000365_010 Hb_020390_010 Hb_020390_010 Hb_029920_060--Hb_020390_010 Hb_000375_300 Hb_000375_300 Hb_001619_060--Hb_000375_300 Hb_000049_160 Hb_000049_160 Hb_001619_060--Hb_000049_160 Hb_001619_060--Hb_001301_280 Hb_002193_060 Hb_002193_060 Hb_001619_060--Hb_002193_060 Hb_001619_060--Hb_185830_060 Hb_001486_040--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_185830_060--Hb_002193_060 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_002486_080 Hb_002486_080 Hb_001301_280--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_001301_280--Hb_001951_060 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_007416_070 Hb_007416_070 Hb_001301_280--Hb_007416_070 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_000365_010--Hb_001951_060 Hb_032920_070 Hb_032920_070 Hb_020390_010--Hb_032920_070 Hb_020390_010--Hb_005701_120 Hb_000288_020 Hb_000288_020 Hb_020390_010--Hb_000288_020 Hb_002110_100 Hb_002110_100 Hb_020390_010--Hb_002110_100 Hb_006683_070 Hb_006683_070 Hb_020390_010--Hb_006683_070 Hb_000046_170 Hb_000046_170 Hb_020390_010--Hb_000046_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445665 1.18141 1.76484 4.04495 0.392062 0.578004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07272 2.08157 0.525953 1.23723 2.63427

CAGE analysis