Hb_000046_170

Information

Type -
Description -
Location Contig46: 125076-131159
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01880g
description hypothetical protein
nr
ID XP_012069426.1
description PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067KV54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02035 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43617: 125258-131179 , PASA_asmbl_43618: 129117-131002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_170 0.0 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
2 Hb_000367_090 0.068259911 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
3 Hb_004607_070 0.0764377629 - - integral membrane protein, putative [Ricinus communis]
4 Hb_000179_270 0.0798219498 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
5 Hb_028487_160 0.080381842 - - clathrin assembly protein, putative [Ricinus communis]
6 Hb_000087_070 0.0809057991 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_000165_080 0.0825636966 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
8 Hb_002357_060 0.0837877964 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
9 Hb_005648_010 0.0856339321 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
10 Hb_132880_040 0.0867878109 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
11 Hb_003988_050 0.0873449233 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
12 Hb_000983_050 0.0880696867 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000035_390 0.088336709 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
14 Hb_001269_190 0.0913106914 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
15 Hb_066842_010 0.0924796567 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
16 Hb_000025_190 0.0931809582 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
17 Hb_020390_010 0.0938412521 - - PREDICTED: expansin-A13 [Jatropha curcas]
18 Hb_000185_220 0.0939036574 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
19 Hb_032920_070 0.0942520204 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
20 Hb_005701_120 0.095373639 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]

Gene co-expression network

sample Hb_000046_170 Hb_000046_170 Hb_000367_090 Hb_000367_090 Hb_000046_170--Hb_000367_090 Hb_004607_070 Hb_004607_070 Hb_000046_170--Hb_004607_070 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_028487_160 Hb_028487_160 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080 Hb_000367_090--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000367_090--Hb_000227_160 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_000035_390 Hb_000035_390 Hb_004607_070--Hb_000035_390 Hb_020390_010 Hb_020390_010 Hb_004607_070--Hb_020390_010 Hb_000928_190 Hb_000928_190 Hb_004607_070--Hb_000928_190 Hb_005648_010 Hb_005648_010 Hb_004607_070--Hb_005648_010 Hb_009711_050 Hb_009711_050 Hb_004607_070--Hb_009711_050 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_028487_160--Hb_000227_160 Hb_006452_120 Hb_006452_120 Hb_028487_160--Hb_006452_120 Hb_008748_030 Hb_008748_030 Hb_028487_160--Hb_008748_030 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_008289_040 Hb_008289_040 Hb_028487_160--Hb_008289_040 Hb_000087_070--Hb_002272_270 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000087_070--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_003988_050 Hb_003988_050 Hb_000165_080--Hb_003988_050 Hb_000165_080--Hb_000367_090 Hb_000703_330 Hb_000703_330 Hb_000165_080--Hb_000703_330 Hb_000165_080--Hb_028487_160 Hb_000165_080--Hb_000227_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24991 4.20435 3.96231 10.5239 2.30934 3.19756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15423 5.06286 2.91961 6.17902 6.62816

CAGE analysis