Hb_001269_190

Information

Type -
Description -
Location Contig1269: 228863-235176
Sequence    

Annotation

kegg
ID rcu:RCOM_0470970
description golgi snare 11 protein, putative
nr
ID XP_012067527.1
description PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
swissprot
ID Q9LMP7
description Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1
trembl
ID A0A067L0J5
description Golgi SNAP receptor complex member 1 OS=Jatropha curcas GN=JCGZ_27009 PE=3 SV=1
Gene Ontology
ID GO:0000139
description golgi snap receptor complex member 1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08172: 228896-235094 , PASA_asmbl_08173: 231744-232058 , PASA_asmbl_08174: 233232-233494 , PASA_asmbl_08175: 236114-265314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_190 0.0 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
2 Hb_185255_010 0.0699106309 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_002995_050 0.0737528376 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
4 Hb_001489_110 0.075591786 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
5 Hb_000179_270 0.078356621 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
6 Hb_006683_070 0.0791712676 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
7 Hb_000087_070 0.079798755 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_066842_010 0.0859904969 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
9 Hb_000483_300 0.0889660446 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
10 Hb_000046_170 0.0913106914 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
11 Hb_000384_070 0.0927491733 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001662_130 0.0931483053 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
13 Hb_002820_020 0.0935797104 - - hypothetical protein VITISV_005587 [Vitis vinifera]
14 Hb_000590_120 0.096223647 - - dehydroascorbate reductase, putative [Ricinus communis]
15 Hb_010997_090 0.0977406314 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
16 Hb_032920_070 0.0977733209 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
17 Hb_000060_050 0.099265734 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_001353_010 0.0995585183 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
19 Hb_002042_150 0.1008878642 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
20 Hb_025098_010 0.1013777435 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_190 Hb_001269_190 Hb_185255_010 Hb_185255_010 Hb_001269_190--Hb_185255_010 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_001269_190--Hb_001489_110 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070 Hb_000087_070 Hb_000087_070 Hb_001269_190--Hb_000087_070 Hb_025098_010 Hb_025098_010 Hb_185255_010--Hb_025098_010 Hb_185255_010--Hb_006683_070 Hb_005144_050 Hb_005144_050 Hb_185255_010--Hb_005144_050 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_002995_050--Hb_001489_110 Hb_000384_070 Hb_000384_070 Hb_002995_050--Hb_000384_070 Hb_045003_010 Hb_045003_010 Hb_002995_050--Hb_045003_010 Hb_002995_050--Hb_000087_070 Hb_001353_010 Hb_001353_010 Hb_002995_050--Hb_001353_010 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001489_110--Hb_001353_010 Hb_001489_110--Hb_025098_010 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_000087_070--Hb_002272_270 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48616 6.20869 7.20478 20.4428 4.23758 6.33931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4913 13.7755 7.81854 8.56282 13.0193

CAGE analysis