Hb_185255_010

Information

Type -
Description -
Location Contig185255: 101-1271
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06180g
description POPTRDRAFT_576413; DEAD box RNA helicase family protein
nr
ID XP_012090844.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
swissprot
ID Q8LA13
description DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=1 SV=1
trembl
ID A0A067JQS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03037 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185255_010 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
2 Hb_025098_010 0.0526911885 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_006683_070 0.060372966 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
4 Hb_005144_050 0.0689314146 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
5 Hb_001269_190 0.0699106309 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
6 Hb_001489_110 0.0711990781 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
7 Hb_001307_030 0.0742149128 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
8 Hb_000310_090 0.0815697775 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
9 Hb_005800_030 0.0834787917 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
10 Hb_015934_120 0.0846936291 - - PREDICTED: callose synthase 7 [Vitis vinifera]
11 Hb_000297_120 0.0849567997 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
12 Hb_002820_020 0.085604114 - - hypothetical protein VITISV_005587 [Vitis vinifera]
13 Hb_000347_240 0.0860922713 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
14 Hb_001366_180 0.0861892715 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
15 Hb_000060_050 0.0874354063 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
16 Hb_000483_300 0.0885596179 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
17 Hb_002289_080 0.0888461953 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
18 Hb_001189_070 0.0894341305 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
19 Hb_006469_080 0.0898153739 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000087_070 0.0899640156 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_185255_010 Hb_185255_010 Hb_025098_010 Hb_025098_010 Hb_185255_010--Hb_025098_010 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_005144_050 Hb_005144_050 Hb_185255_010--Hb_005144_050 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_025098_010--Hb_001307_030 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_006683_070--Hb_001269_190 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001269_190--Hb_001489_110 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_001269_190--Hb_000087_070 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_001489_110--Hb_002995_050 Hb_001489_110--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2395 10.454 13.3797 36.4915 11.5587 16.212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5062 28.6442 19.6429 16.0298 28.5695

CAGE analysis