Hb_000310_090

Information

Type -
Description -
Location Contig310: 132729-141927
Sequence    

Annotation

kegg
ID rcu:RCOM_0251360
description Ketoacyl-ACP Synthase III (KAS III) (EC:2.3.1.41)
nr
ID NP_001292956.1
description 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
swissprot
ID P49244
description 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii GN=KAS3A PE=2 SV=2
trembl
ID Q000L1
description Beta-ketoacyl-ACP synthase III OS=Jatropha curcas GN=JCGZ_20790 PE=2 SV=1
Gene Ontology
ID GO:0009570
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32818: 128934-131941 , PASA_asmbl_32819: 130538-131941 , PASA_asmbl_32821: 132837-141851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_090 0.0 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
2 Hb_001168_020 0.0581008785 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
3 Hb_001189_070 0.0604379424 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
4 Hb_025098_010 0.0640586181 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_002289_080 0.0673199973 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
6 Hb_086085_020 0.0724986901 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
7 Hb_001314_050 0.077607666 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
8 Hb_008841_020 0.0777097674 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
9 Hb_000200_020 0.07966713 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_185255_010 0.0815697775 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
11 Hb_000078_120 0.0820400814 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_000347_240 0.0831809239 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
13 Hb_000696_330 0.0837755785 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
14 Hb_011344_120 0.0852505024 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
15 Hb_000483_300 0.0860540112 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
16 Hb_025194_100 0.0863664944 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
17 Hb_152371_010 0.0880141442 - - RNA-binding KH domain-containing protein [Theobroma cacao]
18 Hb_008616_050 0.0881961597 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
19 Hb_000087_070 0.0899154008 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
20 Hb_001366_180 0.0902117661 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000310_090 Hb_000310_090 Hb_001168_020 Hb_001168_020 Hb_000310_090--Hb_001168_020 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_025098_010 Hb_025098_010 Hb_000310_090--Hb_025098_010 Hb_002289_080 Hb_002289_080 Hb_000310_090--Hb_002289_080 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_001168_020--Hb_002289_080 Hb_000696_330 Hb_000696_330 Hb_001168_020--Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_001168_020--Hb_000078_120 Hb_003777_320 Hb_003777_320 Hb_001168_020--Hb_003777_320 Hb_000167_080 Hb_000167_080 Hb_001168_020--Hb_000167_080 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001189_070--Hb_001314_050 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_025098_010--Hb_002289_080 Hb_025098_010--Hb_008841_020 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_003929_270 Hb_003929_270 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_001314_050--Hb_031862_100 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97539 4.06542 6.21665 11.2169 4.41758 9.20477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.20319 11.4384 6.99439 7.8522 8.68705

CAGE analysis