Hb_008970_030

Information

Type -
Description -
Location Contig8970: 27806-44051
Sequence    

Annotation

kegg
ID rcu:RCOM_1279410
description arf gtpase-activating protein, putative
nr
ID XP_002527677.1
description arf gtpase-activating protein, putative [Ricinus communis]
swissprot
ID Q9FIQ0
description Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1
trembl
ID B9SNV8
description Arf gtpase-activating protein, putative OS=Ricinus communis GN=RCOM_1279410 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61782: 27917-44142 , PASA_asmbl_61783: 28924-29285 , PASA_asmbl_61784: 32718-33161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008970_030 0.0 - - arf gtpase-activating protein, putative [Ricinus communis]
2 Hb_012498_010 0.0648953221 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
3 Hb_000159_090 0.0675583918 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
4 Hb_007481_010 0.0760524543 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
5 Hb_003025_100 0.0781153835 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
6 Hb_000192_080 0.0797342756 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
7 Hb_013726_090 0.0803841687 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_001269_330 0.0804224227 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_000116_270 0.08047737 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_000256_150 0.080648129 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
11 Hb_086085_020 0.0814880768 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
12 Hb_001500_140 0.0820503221 - - pelota, putative [Ricinus communis]
13 Hb_007638_030 0.0826399201 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
14 Hb_006588_170 0.0835181635 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
15 Hb_000574_450 0.0839102638 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
16 Hb_006153_070 0.084128982 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
17 Hb_000260_350 0.0843471905 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_290 0.0844202723 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
19 Hb_000200_020 0.0847680256 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
20 Hb_004990_010 0.0852490269 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_008970_030 Hb_008970_030 Hb_012498_010 Hb_012498_010 Hb_008970_030--Hb_012498_010 Hb_000159_090 Hb_000159_090 Hb_008970_030--Hb_000159_090 Hb_007481_010 Hb_007481_010 Hb_008970_030--Hb_007481_010 Hb_003025_100 Hb_003025_100 Hb_008970_030--Hb_003025_100 Hb_000192_080 Hb_000192_080 Hb_008970_030--Hb_000192_080 Hb_013726_090 Hb_013726_090 Hb_008970_030--Hb_013726_090 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_000159_090--Hb_003683_020 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_000159_090--Hb_012498_010 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_001818_100 Hb_001818_100 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_003025_100--Hb_012498_010 Hb_091296_010 Hb_091296_010 Hb_003025_100--Hb_091296_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_000192_080--Hb_007638_030 Hb_000009_560 Hb_000009_560 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_000192_080--Hb_004567_090 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_013726_090--Hb_012498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.478 10.3224 14.0238 24.2255 8.38496 18.5801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7362 12.1557 16.4336 16.3608 14.3658

CAGE analysis