Hb_001818_100

Information

Type -
Description -
Location Contig1818: 111613-119668
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06180g
description POPTRDRAFT_576413; DEAD box RNA helicase family protein
nr
ID XP_012090844.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
swissprot
ID Q84W89
description DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2
trembl
ID A0A067JQS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03037 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17699: 111628-119603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_100 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
2 Hb_001629_030 0.0461929101 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
3 Hb_003025_100 0.0576774144 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
4 Hb_004052_170 0.0665701117 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
5 Hb_004108_160 0.0690550585 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
6 Hb_005601_040 0.0712849007 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
7 Hb_000768_200 0.0728110325 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
8 Hb_001789_150 0.0735084357 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
9 Hb_003153_010 0.0737284821 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
10 Hb_000656_010 0.0769615696 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
11 Hb_005582_040 0.0771362889 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
12 Hb_000504_180 0.0781581599 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_000574_450 0.0794974657 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
14 Hb_001195_400 0.0799000375 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
15 Hb_005054_110 0.0801968306 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_000497_300 0.081288954 - - peroxisomal membrane protein [Hevea brasiliensis]
17 Hb_000556_090 0.0814570624 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
18 Hb_010515_020 0.0819159185 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
19 Hb_001226_140 0.0826313208 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
20 Hb_000029_140 0.0830908676 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]

Gene co-expression network

sample Hb_001818_100 Hb_001818_100 Hb_001629_030 Hb_001629_030 Hb_001818_100--Hb_001629_030 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_004108_160 Hb_004108_160 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_001629_030--Hb_005601_040 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_091296_010 Hb_091296_010 Hb_003025_100--Hb_091296_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_000556_090 Hb_000556_090 Hb_004052_170--Hb_000556_090 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_000340_230 Hb_000340_230 Hb_004052_170--Hb_000340_230 Hb_029510_050 Hb_029510_050 Hb_004052_170--Hb_029510_050 Hb_004108_160--Hb_003153_010 Hb_004108_160--Hb_000556_090 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040 Hb_000207_330 Hb_000207_330 Hb_000768_200--Hb_000207_330 Hb_002046_160 Hb_002046_160 Hb_000768_200--Hb_002046_160 Hb_009780_030 Hb_009780_030 Hb_000768_200--Hb_009780_030 Hb_001766_050 Hb_001766_050 Hb_000768_200--Hb_001766_050 Hb_000768_200--Hb_003025_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4762 12.1294 14.1693 21.8118 9.42448 14.3274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7796 15.1743 21.6737 16.9317 26.2165

CAGE analysis