Hb_002046_160

Information

Type -
Description -
Location Contig2046: 192908-195208
Sequence    

Annotation

kegg
ID rcu:RCOM_1648670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002516403.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O23278
description Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2
trembl
ID B9RRN4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1648670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21084: 193539-194812 , PASA_asmbl_21085: 194895-195222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_160 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000300_270 0.0546163061 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_004452_110 0.0587318571 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
4 Hb_001712_060 0.0646595436 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
5 Hb_000768_200 0.0680319926 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
6 Hb_003581_200 0.068513656 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
7 Hb_006658_020 0.0717741434 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
8 Hb_000256_150 0.0719244329 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_003498_080 0.0753266343 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
10 Hb_005650_010 0.0767898319 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001635_120 0.0783362976 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
12 Hb_000049_020 0.0791885923 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_001789_110 0.080134713 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_002883_030 0.080381913 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
15 Hb_006913_020 0.0809164607 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
16 Hb_000441_090 0.0817527666 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
17 Hb_007763_070 0.0818964504 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
18 Hb_004679_030 0.0820924989 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
19 Hb_002849_130 0.0829588593 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
20 Hb_000313_220 0.0832145641 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002046_160 Hb_002046_160 Hb_000300_270 Hb_000300_270 Hb_002046_160--Hb_000300_270 Hb_004452_110 Hb_004452_110 Hb_002046_160--Hb_004452_110 Hb_001712_060 Hb_001712_060 Hb_002046_160--Hb_001712_060 Hb_000768_200 Hb_000768_200 Hb_002046_160--Hb_000768_200 Hb_003581_200 Hb_003581_200 Hb_002046_160--Hb_003581_200 Hb_006658_020 Hb_006658_020 Hb_002046_160--Hb_006658_020 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160 Hb_004452_110--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220 Hb_006775_130 Hb_006775_130 Hb_001712_060--Hb_006775_130 Hb_011249_070 Hb_011249_070 Hb_001712_060--Hb_011249_070 Hb_000482_190 Hb_000482_190 Hb_001712_060--Hb_000482_190 Hb_007763_070 Hb_007763_070 Hb_001712_060--Hb_007763_070 Hb_001712_060--Hb_000300_270 Hb_000207_330 Hb_000207_330 Hb_000768_200--Hb_000207_330 Hb_001818_100 Hb_001818_100 Hb_000768_200--Hb_001818_100 Hb_009780_030 Hb_009780_030 Hb_000768_200--Hb_009780_030 Hb_001766_050 Hb_001766_050 Hb_000768_200--Hb_001766_050 Hb_003025_100 Hb_003025_100 Hb_000768_200--Hb_003025_100 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_002027_080 Hb_002027_080 Hb_003581_200--Hb_002027_080 Hb_003581_200--Hb_000345_160 Hb_079526_040 Hb_079526_040 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_001016_050 Hb_001016_050 Hb_006658_020--Hb_001016_050 Hb_006658_020--Hb_004452_110 Hb_000258_070 Hb_000258_070 Hb_006658_020--Hb_000258_070 Hb_002495_080 Hb_002495_080 Hb_006658_020--Hb_002495_080 Hb_132840_110 Hb_132840_110 Hb_006658_020--Hb_132840_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48965 3.41408 2.95691 4.99762 2.00111 3.16014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38032 2.93739 2.87088 2.92826 5.02651

CAGE analysis